View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_47 (Length: 356)
Name: NF6819A_low_47
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 31201158 - 31200821
Alignment:
| Q |
13 |
gaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcgagtttt |
109 |
Q |
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| T |
31201158 |
gaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatagtagaggctttaggttggcagtcaattccttgtttctcgagtttt |
31201059 |
T |
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| Q |
110 |
tccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcacacacattatttcaattaagtgatacagacataaagagaat |
209 |
Q |
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| T |
31201058 |
tccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcgcacacattatttcaattaagtgatacagacataaagagaat |
31200959 |
T |
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| Q |
210 |
atgagtcaataaatgacgtgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgtgataac |
309 |
Q |
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| T |
31200958 |
atgagtcaacaaatgacatgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgtgataac |
31200859 |
T |
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| Q |
310 |
atcccgattagcagcttgacaaagcatacgacccaattg |
348 |
Q |
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| T |
31200858 |
at-ccgattcgcagcttgacaaagcatacgacccaattg |
31200821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 35857028 - 35857168
Alignment:
| Q |
167 |
cacacacattatttcaattaagtgatacagacata----aagagaatatgagtcaataaatgacgtgattcgaagtaacttgaatgaacctctttgcaaa |
262 |
Q |
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| T |
35857028 |
cacacacattatttcaattaagtgatacatacatacataaagagaatatgagt---taaatgacataattcaaagtaacatgaacgaacctctttgcaaa |
35857124 |
T |
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| Q |
263 |
ttcctgtactgtggcgatgtcatcaaagcttccaaccatgtgat |
306 |
Q |
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| T |
35857125 |
ttcctgtactgtggcgctgtcatcaaagcttccaaccatgtgat |
35857168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 35856870 - 35856981
Alignment:
| Q |
41 |
caatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcgagtttttccaatgtagtaacatcgacatgctcaa |
137 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
35856870 |
caatataatacctgaataattcgtatagtagaggctttaggttggcagtcaacaccttgtttctcaagtttttccaatgtagtaacatcgacgtgctcaa |
35856969 |
T |
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| Q |
138 |
tttcaaacgtta |
149 |
Q |
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||||||| |||| |
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| T |
35856970 |
tttcaaatgtta |
35856981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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