View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_53 (Length: 343)
Name: NF6819A_low_53
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_53 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0889 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 3962 - 4284
Alignment:
| Q |
9 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3962 |
agaaacacgcgttctcctttaaattgatgtt----tatatatttaatatgagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
4057 |
T |
|
| Q |
109 |
gaagtcatgaatagacaacatgaagtcggtaacataatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaacattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
4157 |
T |
|
| Q |
209 |
ccaataaattaatgtgctccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
308 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4158 |
ctaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatgtta |
4257 |
T |
|
| Q |
309 |
aactataaatagctccacatattattc |
335 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4258 |
aactataaatagctccacatattattc |
4284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 4166 - 4488
Alignment:
| Q |
9 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166 |
agaaacacgcgttctcctttaaattgatgtt----tatatatttaatatgagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
4261 |
T |
|
| Q |
109 |
gaagtcatgaatagacaacatgaagtcggtaacataatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4262 |
gaagtcatgaatagacaacatgaagtcagtaacataatgcaacaaacattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa |
4361 |
T |
|
| Q |
209 |
ccaataaattaatgtgctccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
308 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4362 |
ctaataaattaatgtgttccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgcaatgtta |
4461 |
T |
|
| Q |
309 |
aactataaatagctccacatattattc |
335 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4462 |
aactataaatagctccacatattattc |
4488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 28580863 - 28580547
Alignment:
| Q |
9 |
agaaacatgcgttctcctttaaattgatgtttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtag |
108 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28580863 |
agaaacatgtgttctcctttaaattaatttttgtttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagagtaga----- |
28580769 |
T |
|
| Q |
109 |
gaagtcatgaatagacaacatgaagtcggt-aacataatgcaacaaaaattgg--caaacttaaactgcttattttatttatcagttgtcatcaatatta |
205 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| || | ||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
28580768 |
-aagtcatgaatagacaacatgaagtgagttaacataatgcaacaaacatcgtttcaaacttaaactgtctattttatttatcagctgccatcaatatta |
28580670 |
T |
|
| Q |
206 |
taac-caataaattaatgtgctccaatgcacatgctgcatacatattttgaccttcaatcattc-agtagctcaaaagagaaaatatgaaccatgtgcaa |
303 |
Q |
| |
|
|||| |||||||||||||| | |||||||||| ||||||||||| |||||||||||| || | |||||||||||||| ||||||||||| |||| || |
|
|
| T |
28580669 |
taactgaataaattaatgtgttacaatgcacat-atgcatacatatgttgaccttcaat-atacaagtagctcaaaagaacaaatatgaaccgtgtgaaa |
28580572 |
T |
|
| Q |
304 |
tgttaaactataaatagctccacat |
328 |
Q |
| |
|
||||| ||||||||||||| |||| |
|
|
| T |
28580571 |
tgttatgctataaatagctctacat |
28580547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 305
Target Start/End: Complemental strand, 28586990 - 28586731
Alignment:
| Q |
43 |
ttatatatttaatataagaaacatgttctcctttaaattaattattgttatttagtgtaggtgtaggaagtcatgaatagacaacatgaagtcggtaaca |
142 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||| |||||| ||||||| || | |||||||||| |||||||| ||||| | |||| |
|
|
| T |
28586990 |
ttatatattaaatataagaaacttgttct---ttaaattaatttttgttacttagtgt---tgaa--aagtcatgaacagacaacagcaagtcagcaaca |
28586899 |
T |
|
| Q |
143 |
taatgcaacaaaaattggcaaacttaaactgcttattttatttatcagttgtcatcaatattataa-ccaataaattaatgtgctcca--atgcacatgc |
239 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||| ||||| | || ||||| |||| |
|
|
| T |
28586898 |
taattaaacaaacattggcaaactaaaactgcttattttatttatcagtatccaccaatattataattaaataaatttatgtgttacaatatgcatatgc |
28586799 |
T |
|
| Q |
240 |
tgcatacatattttgaccttcaatcattcagtagctcaa-aagaga-aaatatgaaccatgtgcaatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
28586798 |
tgcatacatattttgaccttcaatcagccagtagctcaacaaaagacatatatgaaccatatgcaatg |
28586731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 28575592 - 28575451
Alignment:
| Q |
195 |
catcaatattataaccaa-taaattaatgtgctccaatgcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaa |
293 |
Q |
| |
|
||||||||||||||| || |||||||||||| | |||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
28575592 |
catcaatattataactaaataaattaatgtgttacaatgcacatgctgcatacacatgctgaccttcaatctaccagtagctcaaaagagcaaatatgaa |
28575493 |
T |
|
| Q |
294 |
ccatgtgcaatgttaaactataaatagctccacatattattc |
335 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
28575492 |
acgagtgcaatgttaaactataaatagctcaacatatcattc |
28575451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 28568841 - 28568724
Alignment:
| Q |
204 |
tataaccaataaattaatgtgctccaatgcacat--gctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaaccatgtgc |
301 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||| || |||||||||| ||||||||||||||||||||||||||| | |||||| ||| |||||| |
|
|
| T |
28568841 |
tataactaataaattaatgtcttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgc |
28568742 |
T |
|
| Q |
302 |
aatgttaaactataaata |
319 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
28568741 |
aatgttcagctataaata |
28568724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 26316889 - 26316845
Alignment:
| Q |
47 |
atatttaatataagaaacatgttctcctttaaattaattattgtt |
91 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26316889 |
atatttaacataagaaacatgttctcctttaaattaattaatgtt |
26316845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 28569116 - 28569073
Alignment:
| Q |
53 |
aatataagaaacatgttctcctttaaattaattattgttattta |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28569116 |
aatataagaaacatgttctcctttaaattaatcgttgttattta |
28569073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 28575690 - 28575591
Alignment:
| Q |
50 |
tttaatataagaaacatgttctcctttaaattaat-----tattgttatttagtgtaggtgtaggaagtcatgaatagacaacatgaagtcggtaacata |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | |||||||||||||| || | |||||||||||||||||||||||||| | ||||| |
|
|
| T |
28575690 |
tttaataaaagaaacatgttctcctttaaattaatatttgttttgttatttagtgt---tgaa--aagtcatgaatagacaacatgaagtcagcgacata |
28575596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 2872 - 2998
Alignment:
| Q |
211 |
aataaattaatgtgctccaatgcacat--gctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
308 |
Q |
| |
|
|||||||||||||| | |||| ||||| || |||||||||| ||||||||||||||||||||| | ||||| | ||||| || | |||||||||||| |
|
|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatgtta |
2971 |
T |
|
| Q |
309 |
aactataaatagctccacatattattc |
335 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
2972 |
aactataaatagctccacatatcattc |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 2872 - 2998
Alignment:
| Q |
211 |
aataaattaatgtgctccaatgcacat--gctgcatacatattttgaccttcaatcattcagtagctcaaaagagaaaatatgaaccatgtgcaatgtta |
308 |
Q |
| |
|
|||||||||||||| | |||| ||||| || |||||||||| ||||||||||||||||||||| | ||||| | ||||| || | |||||||||||| |
|
|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatgtta |
2971 |
T |
|
| Q |
309 |
aactataaatagctccacatattattc |
335 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
2972 |
aactataaatagctccacatatcattc |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 5893085 - 5893019
Alignment:
| Q |
269 |
agtagctcaaaagagaaaatatgaaccatgtgcaatgttaaactataaatagctccacatattattc |
335 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
5893085 |
agtagctcaaaagagcaaatatgaaccgtgtgcaatgttcaacaataaatagctccacatatcattc |
5893019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University