View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_55 (Length: 339)
Name: NF6819A_low_55
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 35628722 - 35629045
Alignment:
| Q |
10 |
atgagatggacatcaagttacacaatttaacttgtttgcattaataatttctgtgtaataaattgaatcttttttcagacaaccggagaagtatgaagct |
109 |
Q |
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| T |
35628722 |
atgaaatggaccacaagttacacaatctaacttgtttgcattaatactttctgtgtaataaattgaatcttttttcagacaaccggagaagtatgaagct |
35628821 |
T |
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| Q |
110 |
gatacagaaattgaatcagtgtctcccaagaataaaacattgtctccaagactctcaagcatttgcatttgtttaaactttccggtctgagcatcgaatt |
209 |
Q |
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| T |
35628822 |
gatacagaaattgaatcagtgtctcccaagaataaaacattgtctccaagactctcaagcttttttatttgtttaaactttctggtctgagcatcgaatt |
35628921 |
T |
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| Q |
210 |
caaacttgtacacttcgaaatcattattaaaattaaaatctcttttcaccatccacaagtctccctctaatgatttcacaagataatctttaaacctttc |
309 |
Q |
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| T |
35628922 |
ccaacttatacacttggaaatcattcttaaaagtaaaaaatcttttcaccatccacaagtctccctctaatgatttcacaagataacctttaaaccttcc |
35629021 |
T |
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| Q |
310 |
atgaaaagctatgtcctgaattgg |
333 |
Q |
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|||||||||||||||||||||||| |
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| T |
35629022 |
atgaaaagctatgtcctgaattgg |
35629045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 35625248 - 35625319
Alignment:
| Q |
245 |
aaatctcttttcaccatccacaagtctccctctaatgatttcacaagataatctttaaacctttcatgaaaa |
316 |
Q |
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||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |
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| T |
35625248 |
aaatcccttttcaccagccacaagtctccctctaatgacttcacaagataacctttaaaggttccatgaaaa |
35625319 |
T |
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