View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_56 (Length: 337)
Name: NF6819A_low_56
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5188280 - 5188609
Alignment:
| Q |
1 |
aatatcttagagggagaccaacccattcgataacttcactattatttttctttcttcttccnnnnnnnnn-ctccactattattgttggcatctactatt |
99 |
Q |
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| T |
5188280 |
aatatcttagagggagaccaacc-attcgataacttcactattatttttctttcttcttccaaaaaaaaaactccactattattgttggcatctactatt |
5188378 |
T |
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| Q |
100 |
tgctaaaagaatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatattatgtcat |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188379 |
tgctaaaaggatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatattatgtcat |
5188478 |
T |
|
| Q |
200 |
cggaatattccttgtaccnnnnnnnnncgtagctgtcattttgatgaataaaataattcatatatactgtataggaagggatttggaatctgcatcaaac |
299 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5188479 |
cggaatattccttgtacctttttttttcgtagctgtcattttgatgaataaaataattcatatatactgtata-gaagggatttggaatctgcatcaaac |
5188577 |
T |
|
| Q |
300 |
ccttgcgtcgttgtgttgcatgatgaatgaaa |
331 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5188578 |
ccttgcgtcgttgtgttgcatgatgaatgaaa |
5188609 |
T |
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