View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_6 (Length: 492)
Name: NF6819A_low_6
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_6 |
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| [»] scaffold0166 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 11841872 - 11841737
Alignment:
| Q |
230 |
atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaattagttgaacgat |
329 |
Q |
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| T |
11841872 |
atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattggagattgcttgaacagtacaatgattctatcttttaattagtctaacgat |
11841773 |
T |
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| Q |
330 |
ggttttttcattcgccgacaaaggttagacctttct |
365 |
Q |
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| T |
11841772 |
ggttttttcattcgccgacaaaggttcgacctttct |
11841737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 11842091 - 11841988
Alignment:
| Q |
16 |
tgtatcagagggcaaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaacttagag |
115 |
Q |
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| T |
11842091 |
tgtatcagagggcaaacatttacctgttgaagcattaccagacattgcgatcaaagaatggatgcgcacttttgcagactgaatagattgcaacttagag |
11841992 |
T |
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| Q |
116 |
tgga |
119 |
Q |
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|||| |
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| T |
11841991 |
tgga |
11841988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 11841962 - 11841890
Alignment:
| Q |
122 |
aattgtgtgaactgtgttaataactgctgccaaaaagatatctgaaaccatgcatcagataaactaattattc |
194 |
Q |
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| T |
11841962 |
aattgtgtgaactgtgttaataaccgctgccaaaaagatatctgaaaccatgcatcagataaactaattattc |
11841890 |
T |
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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 19345650 - 19345581
Alignment:
| Q |
296 |
tacaatgattctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttct |
365 |
Q |
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| T |
19345650 |
tacaatgattatatcctctaattagccgaacgatggttttttcattcgccgacaaaggttcgacctttct |
19345581 |
T |
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Target: scaffold0166 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 7059 - 6975
Alignment:
| Q |
233 |
aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat |
317 |
Q |
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| T |
7059 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
6975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 24764562 - 24764478
Alignment:
| Q |
233 |
aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat |
317 |
Q |
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| T |
24764562 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
24764478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 24069225 - 24069156
Alignment:
| Q |
20 |
tcagagggcaaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttg |
89 |
Q |
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| T |
24069225 |
tcagatggcaaacatttacctgttgaagaatttccggacaaagcaatcaaagagtgaatgcgcacttttg |
24069156 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 15821093 - 15820999
Alignment:
| Q |
20 |
tcagagggcaaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaacttaga |
114 |
Q |
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| T |
15821093 |
tcagaaggtaaacaattacatgtcgaggcattgccggacattgcaatcaaagagtgaatgcgcacttttgtggactgaatggattgcaacttaga |
15820999 |
T |
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Target: scaffold0356 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 13050 - 12969
Alignment:
| Q |
29 |
aaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaact |
110 |
Q |
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| T |
13050 |
aaacatttacctgtcgaaacattgccggacattgcaatcaaagaatgtatgcgggcttttgcagattgaatcgattgcaact |
12969 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 25276546 - 25276486
Alignment:
| Q |
304 |
ttctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttc |
364 |
Q |
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| T |
25276546 |
ttctatattttaattagtcgaacgatggttttttcattcctcgacaaatgttcgtcctttc |
25276486 |
T |
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