View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_60 (Length: 329)
Name: NF6819A_low_60
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 10121781 - 10121462
Alignment:
| Q |
1 |
tcattgaaatagtcaccttgaggagattcaggaccaagagataaagatataatgtgaacaccatctcttatggcatcatcaaaggcagctaacaagtcca |
100 |
Q |
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| T |
10121781 |
tcattgaaatagtcaccttgaggagattcaggaccaagagataaagatataatgtgaacaccatctcttatggcatcatcaaaggcagctaacaagtcca |
10121682 |
T |
|
| Q |
101 |
catcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgctgctaacccattataattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121681 |
catcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgctgctaacccattataattcat |
10121582 |
T |
|
| Q |
201 |
gcttgagacgtatcgtcctgctgctgtggaggctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctgaccctcct |
300 |
Q |
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| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10121581 |
gtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctgacccttct |
10121482 |
T |
|
| Q |
301 |
tctgcttcatatccactcat |
320 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
10121481 |
tctgtttcatatccactcat |
10121462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 30628296 - 30628613
Alignment:
| Q |
1 |
tcattgaaatagtcaccttgaggagattcaggaccaagagataaagatataatgtgaacaccatctcttatggcatcatcaaaggcagctaacaagtcca |
100 |
Q |
| |
|
||||||||||| || ||||| || |||| || ||||||||||| ||| | ||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
30628296 |
tcattgaaataatctccttgtggtgattgagcaccaagagatagagacaaaatgtgaacaccatctcttatagcatcatcaaatgcagctagcaagtcca |
30628395 |
T |
|
| Q |
101 |
catcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgctgctaacccattataattcat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||| ||| ||| ||||| || ||||||||||| |
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|
| T |
30628396 |
catcatagcaacctgaatcccaacatgttttgtacacagcaattctagccataggtgcacctccccttgcacctccacttgctagtcctttataattcat |
30628495 |
T |
|
| Q |
201 |
gcttgagacgtatcgtcctgctgctgtggaggctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctgaccctcct |
300 |
Q |
| |
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| || || |||| ||||| ||| | || ||||||||||| |||||||| | |||||| || || |||||||| |||| |||| | |||| || | |
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| T |
30628496 |
gttttgtacatatctccctgcagctattgaagctgtatggctaccatgacctgtgctgtccctagctgatctgaatgagatttttgcatttgactcttcc |
30628595 |
T |
|
| Q |
301 |
tctgcttcatatccactc |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
30628596 |
tctgcttcatatccactc |
30628613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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