View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_62 (Length: 323)
Name: NF6819A_low_62
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 160 - 318
Target Start/End: Complemental strand, 7303778 - 7303625
Alignment:
| Q |
160 |
ttgaccttgagccaaaatcttcacatgataatttctatttttatccaaaatgttaagtgaaagaaatttttaa-tggaatatttgttggcattaaagatt |
258 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
7303778 |
ttgaccttgagccaaattcttaccatgataatttctatttttatccaaaatgttaagtgaaaggaattttcaaatggaatatttgttggcattaaagatt |
7303679 |
T |
|
| Q |
259 |
atattgtggatatagaatttgagattaactataacttctatttttgcctcattaccaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7303678 |
atattgtggatatagaatttgagatt------aacttctatttttgcctcattaccaact |
7303625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 7303961 - 7303844
Alignment:
| Q |
16 |
tcttatgaactctaatattaagtttattaggagacaaacaaaccaagttgctcatagtttggccaggaaggcttcgcctatagcaaatttccgtattttc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
7303961 |
tcttatgaactctaatgttaagtttattaggagacaaacaaaccaagttgctcatagtttggttagggaggcttcgcctatagctaatttccgtattttc |
7303862 |
T |
|
| Q |
116 |
tataacattccaacatgt |
133 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7303861 |
tataacattccaacatgt |
7303844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 32639676 - 32639619
Alignment:
| Q |
16 |
tcttatgaactctaatattaagtttattaggagacaaacaaaccaagttgctcatagt |
73 |
Q |
| |
|
||||||||||||| ||||||| || ||||| |||||| ||||| || ||||||||||| |
|
|
| T |
32639676 |
tcttatgaactctgatattaaattaattagaagacaagcaaacaaaattgctcatagt |
32639619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University