View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_68 (Length: 314)
Name: NF6819A_low_68
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_68 |
 | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 32457033 - 32457314
Alignment:
| Q |
15 |
gagggtaagagaaagagagagaatgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32457033 |
gagggtaagagaaagagagagaatgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgagg |
32457132 |
T |
|
| Q |
115 |
ttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgttgggggaaaggacggagacgacatcgcctttttggatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32457133 |
ttattgagaatggcgccggacattggaacggagaaatgaagctcgtacatggccggagtgttgggggaaaggacggagacgacatcgcctttttggatgc |
32457232 |
T |
|
| Q |
215 |
cgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaagtgttgttgtatatgat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
32457233 |
cgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaggtattgttgtatatgat |
32457314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 32464098 - 32463821
Alignment:
| Q |
19 |
gtaagagaaagagagagaatgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgaggttat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
32464098 |
gtaagagaaagagagagaatgtcaacaaagatgagtttcgattcactatggatgaggagaacagagaggcttttgtggtcgagtcggaagttgaggttat |
32463999 |
T |
|
| Q |
119 |
tgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgttgggggaaaggacggagacgacatcgcctttttggatgccgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32463998 |
tgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgttgggggaaaggacggagacgacgtcgcctttttggatgccgag |
32463899 |
T |
|
| Q |
219 |
ggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaagtgttgttgtatatgat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
32463898 |
ggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaggtattgttgtatatgat |
32463821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 32472986 - 32473065
Alignment:
| Q |
235 |
gcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaagtgttgttgtatatgatggaaggtgtgttggggta |
314 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32472986 |
gcaagttggaggcatcgtttgtgggtttgagaccatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggta |
32473065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 23526 - 23245
Alignment:
| Q |
15 |
gagggtaagagaaagagagagaatgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgagg |
114 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23526 |
gagggcaagagaaagggagagaatgtcaacaaagatgagtttcgattcactgtggatgagcagcgcggagagggttttgtagtcaagtcggaagctgagg |
23427 |
T |
|
| Q |
115 |
ttattgagaatggcgccggacattggaacggagaaatgaagctcatacatggccggagtgttgggggaaaggacggagacgacatcgcctttttggatgc |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||| ||||||||| ||||| |
|
|
| T |
23426 |
ttgttgagaatggcgccggacattggaacggagaattgtagctcgtacatggccggagtgttgggagagaggacggagacgacgtcgccttttacgatgc |
23327 |
T |
|
| Q |
215 |
cgagggaagaaagtgatgaagcaagttgaagacatcttttgtgggtttgagaccaagtgaatgaagtgttgttgtatatgat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
23326 |
cgagggaagaaagtgatgaagcaagttgaagacatcgtttatgggtttgaaaccatgtgaatgaagtgctgttgtatatgat |
23245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University