View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_73 (Length: 308)
Name: NF6819A_low_73
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 296
Target Start/End: Complemental strand, 26930054 - 26929810
Alignment:
| Q |
41 |
gtcttttttgaatgtgaaaattaaaagttattttggggggtgggaaaagtttttgtccatgaccttaacgaagctcgcatacgttagcccaagtcatttg |
140 |
Q |
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| T |
26930054 |
gtcttttttgaatgtgaaaattcaaagttattttggggggtgggaaaagtttttgtccatgaccttaacgaagctcgcataagttagcccaagtcatttg |
26929955 |
T |
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| Q |
141 |
ttgttattttctctcttcgatacttatccgccgttttctggagtgtttctcgcaaatcaatcgtttgtaagcgaatcttcattttgtattcattatatta |
240 |
Q |
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| T |
26929954 |
ttgttattttctctcttcgatacttatccgccgttttctggagtgtttctcgcaaatcaatcgcctgtaagccaatc-----------ttcattatatta |
26929866 |
T |
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| Q |
241 |
ttcgcttatcatatgtttacattaactatttcttgaaactgttttacttgaatatt |
296 |
Q |
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| T |
26929865 |
ttcgcttattatatgtttacattaactaagtcttgaaactgttttacttgaatatt |
26929810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 17197498 - 17197596
Alignment:
| Q |
44 |
ttttttgaatgtgaaaattaaaagttattttggggggtgggaaaagtttttgtccatgaccttaacgaagctcgcatacgttagcccaagtcatttgtt |
142 |
Q |
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| T |
17197498 |
ttttttgaatgtgtaaattcaaagtgattttgtggggtgggaaaagtttttgcccatgatcttaactaagctcacataagttagcccaagtcatttgtt |
17197596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 17197701 - 17197822
Alignment:
| Q |
174 |
ttttctggagtgtttctcgcaaatcaatcgtttgtaagcgaatcttcattttgtattcattatattattcgcttatcatatgtttacattaactatttct |
273 |
Q |
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| T |
17197701 |
ttttttggattgtttctcgcacatcaatcgcctgtaagccaatcttgatttacttttcattatattattcgtttatcaaatgtttaaattaactaagtct |
17197800 |
T |
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| Q |
274 |
tgaaactgttttacttgaatat |
295 |
Q |
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| T |
17197801 |
tgaaattgttttacttgaatat |
17197822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 33454905 - 33454869
Alignment:
| Q |
10 |
tactaacgaaaagacggacactcactttcccgtcttt |
46 |
Q |
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| T |
33454905 |
tactagcgaaaagacggacactcacttgcccgtcttt |
33454869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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