View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_76 (Length: 303)
Name: NF6819A_low_76
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14073866 - 14073750
Alignment:
| Q |
1 |
ctgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgcccttac |
100 |
Q |
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| T |
14073866 |
ctgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgactgtcacaggctcaaacatgctcttac |
14073767 |
T |
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| Q |
101 |
gggtgaataaaatgaaa |
117 |
Q |
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| T |
14073766 |
gggtgaataaaatgaaa |
14073750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14081342 - 14081226
Alignment:
| Q |
1 |
ctgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgcccttac |
100 |
Q |
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| T |
14081342 |
ctgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgactgtcacaggctcaaacatgctcttac |
14081243 |
T |
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| Q |
101 |
gggtgaataaaatgaaa |
117 |
Q |
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| T |
14081242 |
gggtgaataaaatgaaa |
14081226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 14104812 - 14104723
Alignment:
| Q |
2 |
tgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
91 |
Q |
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| T |
14104812 |
tgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
14104723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 11837453 - 11837223
Alignment:
| Q |
9 |
tctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgcccttacgggtgaat |
108 |
Q |
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| T |
11837453 |
tctgatatagattttcatgaggctactttgaaaaacatggtttatggttttggttactttcttgattgtcacaggctcagacaagcccttagccttaaat |
11837354 |
T |
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| Q |
109 |
aaaatgaaaaactgaac-ttgttataaatatgagtgtgaact--tggtgctgttctgctgtaacagaatttatttgtataacactgcataccttgttatg |
205 |
Q |
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| T |
11837353 |
aaaatgaaaatttaaacgttgttataaatttgattgtgaacttattataccgttctgctttaacagaattt-tgttagtaacactatataccctgttatg |
11837255 |
T |
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| Q |
206 |
tgtggtcatgatatcagtc-aaaagaaataat |
236 |
Q |
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| T |
11837254 |
tgtggacatgctatcagtcaaaaagaaataat |
11837223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 14113051 - 14112985
Alignment:
| Q |
8 |
ctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgat |
74 |
Q |
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| T |
14113051 |
ctctgatttggatcttcataaggctacattgaaaaacttggcttatggttttgcttaatttgttgat |
14112985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 14073744 - 14073695
Alignment:
| Q |
185 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
234 |
Q |
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| T |
14073744 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14073695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 14081220 - 14081171
Alignment:
| Q |
185 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
234 |
Q |
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| T |
14081220 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14081171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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