View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_8 (Length: 474)
Name: NF6819A_low_8
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 206 - 468
Target Start/End: Original strand, 29583921 - 29584183
Alignment:
| Q |
206 |
aaagctgtagttaatcagcgtagcaaattcataagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagtt |
305 |
Q |
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| T |
29583921 |
aaagctgtagttaatcaacgtagcaaattcagaagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagtt |
29584020 |
T |
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| Q |
306 |
caagtgatgttgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattattt |
405 |
Q |
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| T |
29584021 |
caagtgatattgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattattt |
29584120 |
T |
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| Q |
406 |
gttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
468 |
Q |
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| T |
29584121 |
gttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
29584183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 29583617 - 29583810
Alignment:
| Q |
4 |
catagaaagagtgtacatccctttttgcgaatgagttgagtgagtatcactataaacctagagatgccaaggatggaacatctggagcacaatccaagtg |
103 |
Q |
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| T |
29583617 |
catagaaagagtgtacatccctttttgcgaatgagttgagtgagtatcactataaacctagagatgccaaggatggaaaatctggagcataatccaagtg |
29583716 |
T |
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| Q |
104 |
taattacgaatgaactctaatattatcttaaattttggtttggccttaactcaacctcacaatatcggtttgtaaggtaagggatctttctcac |
197 |
Q |
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| T |
29583717 |
tcattacgaatgaactctaatattatcttaaattttggtttggacctaactcaacctcacaatatcggtttgtaaggtaagggatatttctcac |
29583810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 29610729 - 29610626
Alignment:
| Q |
251 |
tgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatctc |
350 |
Q |
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|||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
29610729 |
tgccttacagatacactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctc |
29610630 |
T |
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| Q |
351 |
taca |
354 |
Q |
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|||| |
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| T |
29610629 |
taca |
29610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 352
Target Start/End: Original strand, 25128780 - 25128882
Alignment:
| Q |
250 |
atgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatct |
349 |
Q |
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||||||||| || |||||||||||| | |||||||| |||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
25128780 |
atgccttaccgcgacacaaggagcaaagttatagtgaattccgcttgctttaacttcaagcgccgttgcagctccaattcttctaactaaatcagcatct |
25128879 |
T |
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| Q |
350 |
cta |
352 |
Q |
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||| |
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| T |
25128880 |
cta |
25128882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 19809943 - 19809995
Alignment:
| Q |
129 |
tcttaaattttggtttggccttaactcaacctcacaatatcggtttgtaaggt |
181 |
Q |
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| T |
19809943 |
tcttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggt |
19809995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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