View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_81 (Length: 298)
Name: NF6819A_low_81
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 285
Target Start/End: Complemental strand, 7724114 - 7723854
Alignment:
| Q |
25 |
catcatgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcattggtcttgaccgtcctagctgctttactaaatctatta |
124 |
Q |
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| T |
7724114 |
catcatgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcattggtcttgaccgtcctagctgctttactaaatctatta |
7724015 |
T |
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| Q |
125 |
ctattttaacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtt |
224 |
Q |
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| T |
7724014 |
ctattataacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtt |
7723915 |
T |
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| Q |
225 |
tcatcaatgaaacggaactcgttagtcattgctggagagaaacactgcatcttctggttct |
285 |
Q |
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| T |
7723914 |
tcatcaatgaaacggaactcgttagtaattgccggagagaaacactgcatcttctggttct |
7723854 |
T |
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