View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_82 (Length: 297)
Name: NF6819A_low_82
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_82 |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 11841872 - 11841737
Alignment:
| Q |
35 |
atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaattagttgaacgat |
134 |
Q |
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| T |
11841872 |
atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattggagattgcttgaacagtacaatgattctatcttttaattagtctaacgat |
11841773 |
T |
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| Q |
135 |
ggttttttcattcgccgacaaaggttagacctttct |
170 |
Q |
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| T |
11841772 |
ggttttttcattcgccgacaaaggttcgacctttct |
11841737 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 19345650 - 19345581
Alignment:
| Q |
101 |
tacaatgattctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttct |
170 |
Q |
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| T |
19345650 |
tacaatgattatatcctctaattagccgaacgatggttttttcattcgccgacaaaggttcgacctttct |
19345581 |
T |
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Target: scaffold0166 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 7059 - 6975
Alignment:
| Q |
38 |
aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat |
122 |
Q |
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| T |
7059 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
6975 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 24764562 - 24764478
Alignment:
| Q |
38 |
aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat |
122 |
Q |
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| T |
24764562 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
24764478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 25276546 - 25276486
Alignment:
| Q |
109 |
ttctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttc |
169 |
Q |
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| T |
25276546 |
ttctatattttaattagtcgaacgatggttttttcattcctcgacaaatgttcgtcctttc |
25276486 |
T |
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