View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_9 (Length: 469)
Name: NF6819A_low_9
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 237 - 447
Target Start/End: Complemental strand, 40810203 - 40809993
Alignment:
| Q |
237 |
gtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctctctctcgt |
336 |
Q |
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| T |
40810203 |
gtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctctctctcgt |
40810104 |
T |
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| Q |
337 |
aacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctcaaacactaaccttcgctcaattaaaatccctt |
436 |
Q |
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| T |
40810103 |
aacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctcaaacactaaccttcgctcaattaaaatccctt |
40810004 |
T |
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| Q |
437 |
acaattaaact |
447 |
Q |
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| T |
40810003 |
acaattaaact |
40809993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 40810353 - 40810238
Alignment:
| Q |
93 |
ccttccacttgtttccctcattttcagctttgtcagattaatctca------tacactagaatacaaaatacaaagacagcatcatcaccaaagcactag |
186 |
Q |
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| T |
40810353 |
ccttccacttgtttccctcattttcagctttgtcagattaatctcaatctgatacactagaatacaaaatacaaagacagcatcatcaccaaagcactag |
40810254 |
T |
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| Q |
187 |
aaaatctctgtttgtt |
202 |
Q |
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| T |
40810253 |
aaaatccctgtttgtt |
40810238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 30937391 - 30937430
Alignment:
| Q |
93 |
ccttccacttgtttccctcattttcagctttgtcagattaa |
133 |
Q |
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| T |
30937391 |
ccttccacttgtttccctcgttttcagc-ttgtcagattaa |
30937430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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