View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_94 (Length: 284)

Name: NF6819A_low_94
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_94
NF6819A_low_94
[»] chr4 (13 HSPs)
chr4 (1-272)||(8655358-8655630)
chr4 (1-264)||(47540508-47540772)
chr4 (1-264)||(3130272-3130536)
chr4 (3-215)||(7663580-7663793)
chr4 (1-123)||(5817615-5817738)
chr4 (8-185)||(1121016-1121194)
chr4 (5-212)||(23279194-23279402)
chr4 (3-215)||(23873818-23874031)
chr4 (3-215)||(55298208-55298421)
chr4 (8-215)||(8487323-8487531)
chr4 (138-194)||(13159135-13159191)
chr4 (160-215)||(2631141-2631196)
chr4 (136-215)||(20673428-20673507)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-272)||(134921-135193)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-272)||(312748-313020)
scaffold0002 (1-272)||(328202-328474)
[»] chr1 (17 HSPs)
chr1 (1-272)||(21527744-21528016)
chr1 (5-272)||(48266003-48266271)
chr1 (1-224)||(14365958-14366181)
chr1 (1-262)||(4644596-4644858)
chr1 (23-260)||(36305389-36305627)
chr1 (3-260)||(36928752-36929010)
chr1 (1-147)||(52336245-52336392)
chr1 (3-215)||(47115873-47116086)
chr1 (8-146)||(25639874-25640013)
chr1 (3-215)||(48073774-48073987)
chr1 (1-71)||(9528240-9528310)
chr1 (3-215)||(32353639-32353852)
chr1 (160-215)||(3692370-3692425)
chr1 (3-215)||(38231272-38231485)
chr1 (120-214)||(30970951-30971045)
chr1 (23-215)||(37530169-37530362)
chr1 (136-212)||(14119484-14119560)
[»] chr5 (6 HSPs)
chr5 (1-272)||(10487191-10487463)
chr5 (67-214)||(6020388-6020535)
chr5 (3-212)||(32917902-32918112)
chr5 (3-215)||(6264540-6264753)
chr5 (3-215)||(34480541-34480754)
chr5 (25-212)||(587123-587311)
[»] chr3 (13 HSPs)
chr3 (1-272)||(49732218-49732490)
chr3 (5-224)||(13448066-13448285)
chr3 (1-210)||(32004563-32004773)
chr3 (3-260)||(30167642-30167900)
chr3 (67-215)||(28675271-28675419)
chr3 (81-215)||(9378761-9378895)
chr3 (3-215)||(23601358-23601571)
chr3 (32-215)||(7146655-7146839)
chr3 (136-218)||(25873451-25873533)
chr3 (3-215)||(2813842-2814055)
chr3 (8-215)||(6176820-6177028)
chr3 (136-215)||(29309127-29309206)
chr3 (67-211)||(24227465-24227608)
[»] chr6 (12 HSPs)
chr6 (1-264)||(33629681-33629944)
chr6 (3-264)||(1682625-1682887)
chr6 (32-212)||(19256659-19256840)
chr6 (3-215)||(8873168-8873381)
chr6 (3-215)||(15673410-15673623)
chr6 (141-212)||(19348989-19349060)
chr6 (8-215)||(23347808-23348016)
chr6 (120-194)||(33745798-33745872)
chr6 (70-191)||(4406665-4406786)
chr6 (141-215)||(13755189-13755263)
chr6 (154-215)||(25317591-25317652)
chr6 (154-215)||(26205085-26205146)
[»] chr8 (7 HSPs)
chr8 (1-264)||(19385003-19385267)
chr8 (23-260)||(7451957-7452195)
chr8 (25-148)||(12218426-12218550)
chr8 (136-215)||(2871909-2871988)
chr8 (67-214)||(31216834-31216981)
chr8 (160-215)||(16421351-16421406)
chr8 (136-212)||(412711-412787)
[»] scaffold0418 (1 HSPs)
scaffold0418 (3-215)||(7260-7473)
[»] chr2 (10 HSPs)
chr2 (3-215)||(45421103-45421316)
chr2 (3-260)||(31085934-31086192)
chr2 (86-215)||(13549793-13549922)
chr2 (3-215)||(33547457-33547670)
chr2 (3-215)||(43627083-43627297)
chr2 (86-214)||(31774353-31774481)
chr2 (3-215)||(9949606-9949819)
chr2 (94-146)||(25784588-25784640)
chr2 (86-218)||(26180264-26180396)
chr2 (3-206)||(26681466-26681670)
[»] chr7 (12 HSPs)
chr7 (8-263)||(46623294-46623550)
chr7 (23-263)||(15653999-15654240)
chr7 (1-101)||(9546320-9546421)
chr7 (3-251)||(3104488-3104737)
chr7 (67-215)||(12379067-12379215)
chr7 (3-148)||(21277460-21277606)
chr7 (3-215)||(13439638-13439851)
chr7 (67-272)||(43104961-43105166)
chr7 (136-215)||(28327075-28327154)
chr7 (154-213)||(45942588-45942647)
chr7 (121-195)||(968182-968256)
chr7 (136-209)||(30385919-30385992)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-146)||(22624-22770)
[»] scaffold0197 (1 HSPs)
scaffold0197 (67-148)||(12279-12360)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 8655630 - 8655358
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8655630 tcagcctatacccaaacacatgagagggtaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatc 8655531  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8655530 ttgaccttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattccacacaacccaggcacagagaagccaaataa 8655431  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  8655430 gttgcataaaagaacgccttgactttgcatcacctgccaaatgaataaactgaagaaaatggtcatatatatt 8655358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 47540508 - 47540772
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||| |||||||||||| ||| |||||||||| |||||||||||||    
T  47540508 tcagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagttaaggacaacatc 47540607  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || ||||||||||||| |||| |||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  47540608 ttgaccttgtctaacaaacgggaaatgagagttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaaataa 47540707  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtca 264  Q
    |||||||||||||||| || ||||| ||||||| || ||||| | ||||||||||||||||||||    
T  47540708 gttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactgaagaaaatggtca 47540772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 3130536 - 3130272
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| |||||| ||||| ||| ||||||||||||||||||||||      
T  3130536 tcagcctatacccaaacacacaagagggcaagaccaccactgttgagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacaat 3130437  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || |||||||| ||||||||| |||||||||||||||||||||  ||||||||| | |||| |||||||||||||||||| |||||||||||||    
T  3130436 ttgaccttgtctaacaagcggggaatgagagttattacattattaaacagacgattattttgttcattccacacaacccaggcacaaagaagccaaataa 3130337  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtca 264  Q
    |||||||||||||||| || ||||| ||||||| || ||| | | ||||||||||||||||||||    
T  3130336 gttgcataaaagaacgtctagacttagcaccacctgtcaactaagtaaactgaagaaaatggtca 3130272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 7663793 - 7663580
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||| ||| ||||||||||| || ||| |||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  7663793 agccaatacccaaacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 7663694  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || |||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| |||||||||||| ||||| |||||||| ||||||    
T  7663693 aaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagt 7663594  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  7663593 tgcataaaagaacg 7663580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5817738 - 5817615
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtag-ctttttagccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||  |||||||| ||||||||||||||||||||||||    
T  5817738 tcagcctatacccaaacacataagagggcaagaccaccactgctgagtaccaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatc 5817639  T
Q  100 ttgacattatctaacaaacgggga 123  Q
    ||||| ||||||||||| ||||||    
T  5817638 ttgaccttatctaacaagcgggga 5817615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 1121194 - 1121016
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||||| |||||||||||||| ||| |||| ||| |  ||||||||| |   ||||| ||| |||||||||||||||| || |    
T  1121194 atacccaaacaaacaagagggcatgaccaccactgttgggtaccaaaaacaaagatagcttttttaattttcaatcaacctaaggacaacatctttacct 1121095  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcaca 185  Q
    | |||||||||||||| ||| |||||||||||||||||||||  ||||||||||| |||| |||||||| |||||||||    
T  1121094 tgtctaacaaacgggggatgtgagttattacattattaaacagacgattatttcgttcattccacacaatccaggcaca 1121016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 23279194 - 23279402
Alignment:
Q  5 cctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttttagccttcaa-ccaagctaaggacaacatcttga 103  Q
    |||||||||||||| |  ||||||||||||||||||||||| ||| | || ||| ||||||||||||  ||||  | |||  |||| |  |||||||| |    
T  23279194 cctatacccaaacaaacaagagggcaagaccaccactgttgggtaccgaaaacaaaagtagcttttttaccttttagccaccctaaaggaaacatcttaa 23279293  T
Q  104 cattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttg 203  Q
    | || ||||| |||||||| |||||||| |  |||||||||||||  ||||||||||| || | ||||||||||||  |||| |||||||| ||||||||    
T  23279294 ccttgtctaataaacgggggatgggagtaacaacattattaaacagacgattatttcgttcgttccacacaacccacacacaaagaagccatataagttg 23279393  T
Q  204 cataaaaga 212  Q
    |||||||||    
T  23279394 cataaaaga 23279402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 23874031 - 23873818
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  23874031 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagctt 23873932  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  ||||| |  |||| ||| ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  23873931 aatcttatcaagtaaacaggggatgggggtcacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 23873832  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  23873831 tgcataaaagaacg 23873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 55298208 - 55298421
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  55298208 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaactt 55298307  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  ||||| |  |||| ||| || || || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  55298308 aatcttatcaagtaaacaggggataggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 55298407  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  55298408 tgcataaaagaacg 55298421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 8487531 - 8487323
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| ||| |  |    
T  8487531 atacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatct 8487432  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcat 206  Q
    ||||||| ||||  || ||||| || |  |||| ||||||||| || ||||| || |||  ||| |||||||||||||| | |||||| || ||||||||    
T  8487431 tatctaataaacaagggatgggggtaacaacatgattaaacatacggttattacgttcagtccaaacaacccaggcacataaaagccatattagttgcat 8487332  T
Q  207 aaaagaacg 215  Q
    |||||||||    
T  8487331 aaaagaacg 8487323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 13159191 - 13159135
Alignment:
Q  138 attattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagcca 194  Q
    |||||||||||| |||||||||||||||| | |||||||||||||| | ||||||||    
T  13159191 attattaaacattcgattatttcgctcattctacacaacccaggcaaaaagaagcca 13159135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 2631141 - 2631196
Alignment:
Q  160 cgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    ||||||| |||||||||||| ||||| |||||||| || |||||||||||||||||    
T  2631141 cgctcattccacacaacccatgcacatagaagccatattagttgcataaaagaacg 2631196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 20673428 - 20673507
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||| ||||||||| || |||||  | |||| ||| |||||| ||||||| |||||||| || |||||||||||||||||    
T  20673428 acatgattaaacatacggttattatgttcattccaaacaacctaggcacatagaagccatattagttgcataaaagaacg 20673507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 135193 - 134921
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  135193 tcagcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatc 135094  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  135093 ttgaccttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataa 134994  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  134993 gttgcataaaagaacgtcttgactttgcaccacctgccaaatgaataaactgacgaaaatggtcacatatatt 134921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 313020 - 312748
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  313020 tcagcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatc 312921  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  312920 ttgaccttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataa 312821  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  312820 gttgcataaaagaacgtcttgactttgcaccacctgccaaatgaataaactgacgaaaatggtcacatatatt 312748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 328474 - 328202
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  328474 tcagcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatc 328375  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  328374 ttgaccttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataa 328275  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  328274 gttgcataaaagaacgtcttgactttgcaccacctgccaaatgaataaactgacgaaaatggtcacatatatt 328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 21527744 - 21528016
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  21527744 tcagcctatacccaaacacataagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggataacatc 21527843  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21527844 ttgaccttatctaacaaacggggaatgggagttattacattattaaacagtcgattatttcgctcattccacacaacccaggcacagagaagccaaataa 21527943  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| || ||||| ||||||| || |||||||||||||||||||||||||||| |||||||    
T  21527944 gttgcataaaagaacgtctagacttagcaccacctgtcaaatgaataaactgaagaaaatggtcagatatatt 21528016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 48266271 - 48266003
Alignment:
Q  5 cctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttga 103  Q
    ||||||||||||||||  |||||| | ||||||||||| | |||| |||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||    
T  48266271 cctatacccaaacacacaagagggtatgaccaccactgctaagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatcttga 48266172  T
Q  104 cattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttg 203  Q
    | ||  ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  48266171 ccttgcctaacaaacggggaatgagagttattacattattaaacagacgattatttcgctcattccacacaacccagacacagagaagccaaataagttg 48266072  T
Q  204 cataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    ||||||| |||  || ||||| ||| ||| || ||||| | |||||||||||||||||||| |||||||    
T  48266071 cataaaataacatctagacttagcatcacctgtcaaataagtaaactgaagaaaatggtcagatatatt 48266003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14366181 - 14365958
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||| || ||||||||| ||| ||||||||||||||||||||||||    
T  14366181 tcagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaa-tagcttttttagctttcaaccaagctaaggacaacatc 14366083  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  14366082 ttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgctcattccacacaacccaagcacagagaagctaaataa 14365983  T
Q  200 gttgcataaaagaacgccttgactt 224  Q
    |||||||||||||||| || |||||    
T  14365982 gttgcataaaagaacgtctagactt 14365958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4644596 - 4644858
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttta-gccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||| ||||||||||||  || ||||||||| ||||||||||||||    
T  4644596 tcagcctatacccaaacacacaagagggcacgaccaccactgctgagtaccaaacacaaaagtagctttttttgctttcaaccaacctaaggacaacatc 4644695  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || |||||||||| |||||||| ||||||||||||||||||||   |||||||||| |||| ||||||||||||||||||||||||||||| ||    
T  4644696 ttgaccttgtctaacaaactgggaatggaagttattacattattaaacagatgattatttcgttcattccacacaacccaggcacagagaagccaaacaa 4644795  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggt 262  Q
    |||||||||||||||| || || || ||||||  || ||||| | ||||||| ||||||||||    
T  4644796 gttgcataaaagaacgtctagaattagcaccatctgtcaaataagtaaactgtagaaaatggt 4644858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 36305389 - 36305627
Alignment:
Q  23 agagggcaagaccaccactgttgagtagcaaacacagaagtagc-tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggg 121  Q
    |||||||| |||||||||||||| |||   || ||| |  |||| |||||||| ||||||||| |||||||||||||||| || || ||||||||||||     
T  36305389 agagggcatgaccaccactgttgggtactgaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgga 36305488  T
Q  122 gaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacgccttga 221  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| || ||    
T  36305489 gaatgggagttattacattattaaacagacgattatttcgttcattccacacaacccagacacaaagtagccatataagttgcataaaagaacgtctaga 36305588  T
Q  222 ctttgcaccacttgccaaatgaataaactgaagaaaatg 260  Q
        ||||||| || ||||| | |||| |||||||||||    
T  36305589 aacagcaccacctgtcaaataagtaaattgaagaaaatg 36305627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 36928752 - 36929010
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||   ||||||||||||| ||| |||| ||| |  ||||||||| ||| ||||||||| ||||||||||||||||    
T  36928752 agccaatacccaaacaaacaagagggcttaaccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctt 36928851  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || ||||||||||| || ||||||||||| |||||||||||||  ||||||||||| |||| |||||||||||| ||||| || ||||||||||||    
T  36928852 taccttgtctaacaaacgagggatgggagttataacattattaaacagacgattatttcgttcattccacacaacccaagcacaaagtagccaaataagt 36928951  T
Q  202 tgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatg 260  Q
    |||||||||||||| || ||    ||||||| || ||||| | |||| |||||||||||    
T  36928952 tgcataaaagaacgtctagaaacagcaccacctgtcaaataagtaaattgaagaaaatg 36929010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 52336245 - 52336392
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||| || ||||||||| | | ||||||||||||||||||||||||    
T  52336245 tcagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaaatagcttttttatctttcaaccaagctaaggacaacatc 52336344  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaac 147  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||||    
T  52336345 ttgaccttgtctaacaaacggggaatgaaagttattacattattaaac 52336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 47115873 - 47116086
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    ||||||||||||||||||  |||||||| ||||||||||| || ||| ||||  || || ||||||||| ||| ||||||||  ||||||||||||||||    
T  47115873 agcctatacccaaacacacaagagggcatgaccaccactgctgggtaccaaaagcaaaaatagcttttttagctttcaaccattctaaggacaacatctt 47115972  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || ||| |||||| ||||||| |||||||||||||||||||||  ||||||||| | |||| ||||||||| |||||||| | ||| || |||| |    
T  47115973 taccttgtctgacaaacagggaatgagagttattacattattaaacagacgattattttgttcattccacacaactcaggcacaaaaaagtcatataaat 47116072  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  47116073 tgcataaaagaacg 47116086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 25640013 - 25639874
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||| | ||||||||||| || ||| |||| ||| ||||||||||| |||| |||||| ||  ||||||||||||||| || |    
T  25640013 atacccaaacaaacaagagggtatgaccaccactgctgggtaccaaaaacaaaagtagcttttctagctttcaactaacttaaggacaacatcttaacct 25639914  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaa 146  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  25639913 tatctaacaaacggggaatgagagttattacattattaaa 25639874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 48073987 - 48073774
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  48073987 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagctt 48073888  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  |||| ||| ||||| || |  || | ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  48073887 aaccttatcaagtaaacaggggatgggggtaacaacgtgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 48073788  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  48073787 tgcataaaagaacg 48073774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9528310 - 9528240
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt 71  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| |||||| |||||    
T  9528310 tcagcctatacccaaacacataagaggacaagaccaccactgctgagtaccaaacacaaaagtagattttt 9528240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 32353852 - 32353639
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  32353852 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagctt 32353753  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  ||||| |  ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  32353752 aatcttatcaagtaaacaagggatgggggtaacaacataattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 32353653  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  32353652 tgcataaaagaacg 32353639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 3692370 - 3692425
Alignment:
Q  160 cgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    ||||||| |||||||||||||||||| |||||||| || |||||||||||||||||    
T  3692370 cgctcattccacacaacccaggcacatagaagccatattagttgcataaaagaacg 3692425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 38231272 - 38231485
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||  | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  38231272 agccaatacccaaacaaacaagagggcgtgaccaccactgatgagtcccaaaaacgaaggtagcttttttagctttcaaccaacctagagacaacagctt 38231371  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  |||||||  ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| ||||| |||||||| ||||| || || |||    
T  38231372 aatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaactcaggcacatagaagtcatattagt 38231471  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  38231472 tgcataaaagaacg 38231485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 30971045 - 30970951
Alignment:
Q  120 gggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaac 214  Q
    |||||||||||| |  ||||| |||||||  ||| |||| ||||||| |||||||||||| ||||| || ||||| || |||||||| |||||||    
T  30971045 gggaatgggagtaaaaacattgttaaacaatcgactattgcgctcatgccacacaacccaagcacaaaggagccagatgagttgcatgaaagaac 30970951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 37530169 - 37530362
Alignment:
Q  23 agagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacattatctaacaaacggg 121  Q
    |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| |||| |||| |||| |||| || ||| || ||||| |  ||||  |    
T  37530169 agagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacaag 37530268  T
Q  122 gaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    | ||||| || |  |||| ||||||||  ||||||||  | |||| ||| ||||||||| |||| |||||||| || |||||||||||||||||    
T  37530269 ggatgggggtaacaacatgattaaacaaacgattattaagttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacg 37530362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 14119484 - 14119560
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaaga 212  Q
    |||| ||||||||  ||||||||||| |||| ||| ||||||||| |||| | |||||| || ||||||||||||||    
T  14119484 acatgattaaacagacgattatttcgttcattccaaacaacccagacacataaaagccatattagttgcataaaaga 14119560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10487463 - 10487191
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  10487463 tcagcctatacccaaacacataagagggcaagaccaccactgttgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatc 10487364  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10487363 ttgaccttatctaacaaacggagaatggaagttattacattattaaacagacgattatttcgctcattccacacaacccaggcacaaagaagccaaataa 10487264  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| || ||||| ||||||| || ||||| |||||| ||||||||||||||| |||||||    
T  10487263 gttgcataaaagaacgtctagacttagcaccacctgtcaaataaataaattgaagaaaatggtcagatatatt 10487191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 6020388 - 6020535
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||||| |||| |||| |||| ||||||||||| || || |  | ||||||||| ||| |||| |||| ||||||||||| ||||||||| |||||||    
T  6020388 tttttagctttcagccaacctaaagacaacatcttaactttgttgagcaaacggggtatgtgagtgattatattattaaacaagcgattattacgctcat 6020487  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaagaac 214  Q
     ||||||||||||| || | || ||||| |||||||||  ||||||||    
T  6020488 tccacacaacccagacataaaggagccatataagttgctgaaaagaac 6020535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 32917902 - 32918112
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttttagccttcaa-ccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  ||||| |  ||||||||||| |||||  |||| ||| | ||||||||||   ||| || |||| |||| |||||||||||    
T  32917902 agccaatacccaaacaaacaagaggacttgaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatctt 32918001  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  |||||||| ||||  || ||||| || |  |||| ||||||||  || |||||||| |||| ||| |||||||||||||| ||||||||||| |||    
T  32918002 aatcttatctaataaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccaggcacatagaagccaaattagt 32918101  T
Q  202 tgcataaaaga 212  Q
    |||||||||||    
T  32918102 tgcataaaaga 32918112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 6264753 - 6264540
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  ||||||   ||||||||||| |||||  |||| ||| |||||||||||| ||| ||||||||| |||| ||||||| |||    
T  6264753 agccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaactt 6264654  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||  |  ||||  || ||||| || |  |||| ||||||||  || |||||||| |||| ||| ||||||||| |||| |||||||| || |||    
T  6264653 aaccttataaagtaaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagt 6264554  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  6264553 tgcataaaagaacg 6264540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 34480541 - 34480754
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| |||| |||| |||| |||| || |||    
T  34480541 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaactt 34480640  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  ||||  || ||||| || |  |||| ||||||||  |||||||| || |||| ||| ||||||||| |||| |||||||| ||||||    
T  34480641 aaccttatcaagtaaacaagggatgggggtaaccacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagt 34480740  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  34480741 tgcataaaagaacg 34480754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 587123 - 587311
Alignment:
Q  25 agggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacattatctaacaaacgggga 123  Q
    |||||| ||| |||| ||||| ||| |||| ||| |||||| ||||| ||  ||||||||| |||| ||||||||||| || || ||||| ||  | |||    
T  587123 agggcacgactaccattgttgtgtaccaaaaacaaaagtagtttttttaggtttcaaccaacctaatgacaacatcttaactttgtctaataagagagga 587222  T
Q  124 atgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaaga 212  Q
    |||||||| |  |||||  |||| | ||||||||| || || | ||| ||||| || ||||| | ||||||||| |||||||| |||||    
T  587223 atgggagtaacaacatttctaaagaggcgattattacgttcgttccatacaactcaagcacacaaaagccaaatgagttgcatgaaaga 587311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 49732490 - 49732218
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  49732490 tcagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatc 49732391  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||  |||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  49732390 ttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgctcgttccacacaacccgggcacagagaagccaaataa 49732291  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcatatatatt 272  Q
    |||||||||||||||| || ||||| ||||||| || ||||| | |||||||||||||||||||  |||||||    
T  49732290 gttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactgaagaaaatggtcggatatatt 49732218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 13448066 - 13448285
Alignment:
Q  5 cctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttttagccttcaaccaagctaaggacaacatcttgac 104  Q
    ||||||| ||||||||  |||| |||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||  |||||    
T  13448066 cctatactcaaacacacaagagagcaagaccaccactgttgagtaccaaacacaaaagtagttttttagctttcaaccaagctaaggacaacaatttgac 13448165  T
Q  105 attatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgc 204  Q
     ||  ||||||| |||| ||||||||||||||||||||||||||  ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  13448166 cttgcctaacaagcgggaaatgggagttattacattattaaacagacgattatttcgttcattccacacaactcaggcacagagaagccaaataagttgc 13448265  T
Q  205 ataaaagaacgccttgactt 224  Q
    ||||||||||| || |||||    
T  13448266 ataaaagaacgtctagactt 13448285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 32004563 - 32004773
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagct-ttttagccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||||| |  |||||||| ||||||||||| |||||| |||||||| |||||| | ||||||| ||||||||||||||||||||||||    
T  32004563 tcagcctatacccaaacatacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagttcttttagctttcaaccaagctaaggacaacatc 32004662  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || |||||||||||||||||| |||||||| ||||||||||||  ||||||||||||||   |||||||| |||  || ||||||| |||||||    
T  32004663 ttgaccttgtctaacaaacggggaatgagagttattgcattattaaacagacgattatttcgctctatccacacaatccaaacaaagagaaggcaaataa 32004762  T
Q  200 gttgcataaaa 210  Q
    |||||||||||    
T  32004763 gttgcataaaa 32004773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 30167900 - 30167642
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||| |||||||||||  | ||| || | ||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  30167900 agccaatacccaaacaaacaagagggcatgaccaccactgccgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 30167801  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || |||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| |||||||||||| ||||| |||||||| ||||||    
T  30167800 aactttgtctaacaaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagt 30167701  T
Q  202 tgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatg 260  Q
    |||||||||||||| || ||    |||||||  | ||||| | ||||||||||||||||    
T  30167700 tgcataaaagaacgtctagaaacagcaccacccgtcaaataagtaaactgaagaaaatg 30167642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 28675419 - 28675271
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||| | ||||||||  |||| ||||||||||| || || |||||||| || ||||||||||| |  ||||||||||| | |||||||||||| | ||    
T  28675419 tttttaactttcaaccagcctaaagacaacatcttaaccttgtctaacaatcgaggaatgggagtaacaacattattaaataggcgattatttcgttaat 28675320  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
     ||||||||| ||| |||| ||||| ||||| |||||||||||||||||    
T  28675319 tccacacaacacagacacacagaagtcaaatgagttgcataaaagaacg 28675271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 9378761 - 9378895
Alignment:
Q  81 ccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccag 180  Q
    |||| |||| ||||||||||| || || ||||| |||||||| |||||||| |  |||||||||||||  ||||  ||||  |||| ||| |||||||||    
T  9378761 ccaacctaaagacaacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaaacagacgatagtttcattcattccaaacaacccag 9378860  T
Q  181 gcacagagaagccaaataagttgcataaaagaacg 215  Q
    ||||| ||||| || || |||||||||||||||||    
T  9378861 gcacacagaagtcatatgagttgcataaaagaacg 9378895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 23601358 - 23601571
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  |||||||||||||||||  |||| ||| |  ||||||||| ||| ||||||||| |||  |||| || |||    
T  23601358 agccaatacccaaacaaacaagagggcttgaccaccactgttgagtcccaaaaacaaagatagcttttttagctttcaaccaacctagagacagcagctt 23601457  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  |||||||  ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  23601458 aatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 23601557  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  23601558 tgcataaaagaacg 23601571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 7146655 - 7146839
Alignment:
Q  32 gaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggag 130  Q
    ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  |||| || ||| |  |||||||  ||||  || ||||| |    
T  7146655 gaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacatcagcttaatcttatctagtaaacaagggatggggg 7146754  T
Q  131 ttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    | |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| |||||||||| |||||||||    
T  7146755 taacaacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcaaaaaagaacg 7146839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 25873533 - 25873451
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacgcct 218  Q
    |||| ||||||||  |||||||| || |||| ||| ||||||||| |||| |||||||| || ||||||||||||||||||||    
T  25873533 acatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatatgagttgcataaaagaacgcct 25873451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 2814055 - 2813842
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||| |||||||| || |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  2814055 agccaatacccaaacaaacaagagggcatgaccaccattgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaactt 2813956  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  |||||||  ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| || ||||||||||| ||||| || || |||    
T  2813955 aatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccagactacccaggcacatagaagtcatattagt 2813856  T
Q  202 tgcataaaagaacg 215  Q
    |||||||| |||||    
T  2813855 tgcataaacgaacg 2813842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 6177028 - 6176820
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| ||| |  |    
T  6177028 atacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatct 6176929  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcat 206  Q
    ||||||  ||||  |  ||| | || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| | |||||| || ||||||||    
T  6176928 tatctagtaaacaagagatgagggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcat 6176829  T
Q  207 aaaagaacg 215  Q
    |||||||||    
T  6176828 aaaagaacg 6176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 29309127 - 29309206
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||| ||||||||| || || || ||||||| ||||||||||||| |||| ||||| || || |||||||||||||||||    
T  29309127 acatgattaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacg 29309206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 24227465 - 24227608
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||||| ||||||||| |||| ||||||||||| || || ||||| || | |||||||||||| |  | |||  |||| | ||||||||| || ||||    
T  24227465 tttttagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgggaatgggagtaacaatatttctaaagaggcgattattacgttcat 24227564  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaag 211  Q
      || |||||||| ||||| |||| |||||| |||||||| ||||    
T  24227565 ttcatacaacccaagcacacagaa-ccaaatgagttgcatgaaag 24227608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 33629681 - 33629944
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttttagccttcaaccaagctaaggacaacatct 100  Q
    ||||||||||| ||||||||  |||||||| |||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||  |    
T  33629681 tcagcctatactcaaacacacaagagggcatgaccaccactgttgagtaccaaacacaaaagtagttttttagctttcaaccaagctaaggacaacaatt 33629780  T
Q  101 tgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataag 200  Q
    |||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||    
T  33629781 tgaccttgtctaacaaacggggaatgggagttattatattattaaacaggcgattatttcgttaattccacacaacccaggcacagagaagccaaataag 33629880  T
Q  201 ttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtca 264  Q
    ||||||||||||||| || ||||| ||||||  || ||||| | ||||||||||||||||||||    
T  33629881 ttgcataaaagaacgtctagacttagcaccatctgtcaaataagtaaactgaagaaaatggtca 33629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 1682625 - 1682887
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagc-------tttttagccttcaaccaagctaaggacaa 95  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||| |||||||| |||||         |||||||| ||||||||||||||||||||    
T  1682625 agcctatacccaaacacacaagaggacatgaccaccactgttgagtaccaaacacaaaagtaaagtagttatttttagctttcaaccaagctaaggacaa 1682724  T
Q  96 catcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaa 195  Q
    ||  ||||| || |||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||    
T  1682725 caatttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaa 1682824  T
Q  196 ataagttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtca 264  Q
    |||||||||||||||||||| |      | ||||||| || ||||| | ||||||||||||||||||||    
T  1682825 ataagttgcataaaagaacgtc------tagcaccacctgtcaaataagtaaactgaagaaaatggtca 1682887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 19256659 - 19256840
Alignment:
Q  32 gaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggag 130  Q
    ||||||||| |||||||| || ||||| || ||| |||| |||| ||||||||  |||| |||||||| || || || ||||| ||||||||||| |  |    
T  19256659 gaccaccacggttgagtaccatacacaaaaataggttttatagctttcaaccatcctaaagacaacatattaaccttgtctaataaacggggaatagacg 19256758  T
Q  131 ttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaaga 212  Q
    | |  ||||||||||| | || ||||||||| |||| ||| |||||| || |||| ||||||||||| ||||||||||||||    
T  19256759 taacaacattattaaagaggcaattatttcgttcattccaaacaacctagacacacagaagccaaatgagttgcataaaaga 19256840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 8873381 - 8873168
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  |||||||||||||||||  |||| ||| | |||||||||| ||| |||| |||| |||| |||| || |||    
T  8873381 agccaatacccaaacaaacaagagggcttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaactt 8873282  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  ||||  || ||||| || |  |||| ||||||||  || |||||||| |||| ||| ||||||||| |||| |||||||| || |||    
T  8873281 aaccttatcaagtaaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagt 8873182  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  8873181 tgcataaaagaacg 8873168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 15673410 - 15673623
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  |||| || |||    
T  15673410 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagctt 15673509  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  |||||||| ||||  || ||||| || |  | || ||||||||  || ||||| || |||| ||| |||||||||||||| ||||||||||| |||    
T  15673510 aatcttatctaataaacaagggatgggggtaacaaaatgattaaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagt 15673609  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  15673610 tgcataaaagaacg 15673623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 19348989 - 19349060
Alignment:
Q  141 attaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaaga 212  Q
    ||||||||| || |||||||| |||| ||| ||||||||||||||||||||||| || ||||||||||||||    
T  19348989 attaaacatacggttatttcgttcattccaaacaacccaggcacagagaagccatattagttgcataaaaga 19349060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 23348016 - 23347808
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| ||| |  |    
T  23348016 atacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatct 23347917  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcat 206  Q
    |||||   ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| | |||||| || ||||||||    
T  23347916 tatctggtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcat 23347817  T
Q  207 aaaagaacg 215  Q
    |||||||||    
T  23347816 aaaagaacg 23347808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 33745798 - 33745872
Alignment:
Q  120 gggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagcca 194  Q
    ||||||||||||||    |||||||||||  |||||||||||||||| |||||||||||| ||||| ||||||||    
T  33745798 gggaatgggagttacataattattaaacagacgattatttcgctcattccacacaacccaagcacaaagaagcca 33745872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 4406665 - 4406786
Alignment:
Q  70 ttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatccc 169  Q
    ||||| |||| |||| |||| |||||||| || || ||||| ||||| |||||| | ||||||    ||||||||||||  ||||| ||||| |||| ||    
T  4406665 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtaggagttgcatcattattaaacagacgattgtttcgttcattcc 4406764  T
Q  170 acacaacccaggcacagagaag 191  Q
    |||||||||||||||| |||||    
T  4406765 acacaacccaggcacaaagaag 4406786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 13755189 - 13755263
Alignment:
Q  141 attaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    ||||||||| || || || ||||||| ||||||||||||| |||| ||||| || || |||||||||||||||||    
T  13755189 attaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacg 13755263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 25317591 - 25317652
Alignment:
Q  154 ttatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||||||  |||| ||||||||| || ||||| ||||||||||| |||||||||||||||||    
T  25317591 ttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaagaacg 25317652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 26205085 - 26205146
Alignment:
Q  154 ttatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||||||  |||| ||||||||| || ||||| ||||||||||| |||||||||||||||||    
T  26205085 ttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaagaacg 26205146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 19385267 - 19385003
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||| | |||||| |||||||||||| ||| || ||||||| |||||||||||||    
T  19385267 tcagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccgaacacaaaagtagcttttttagcttttaaccaagataaggacaacatc 19385168  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataa 199  Q
    ||||| || ||||| |||||||||||| |||||||||||||||||||||  ||||||||||| |||| ||||||||| |||||||||| |||| ||||||    
T  19385167 ttgaccttgtctaagaaacggggaatgagagttattacattattaaacagacgattatttcgttcattccacacaacacaggcacagataagctaaataa 19385068  T
Q  200 gttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtca 264  Q
    |||||||||||||||| || ||||| ||||||| || ||||| | ||||||||||||||||||||    
T  19385067 gttgcataaaagaacgtctggacttagcaccacctgtcaaataagtaaactgaagaaaatggtca 19385003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 7451957 - 7452195
Alignment:
Q  23 agagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacattatctaacaaacggg 121  Q
    |||||||  |||||||||||||| ||| |||| ||| |  ||||||||| ||| ||||||||| |||||||||||||||| || || |||||||||||||    
T  7451957 agagggcttgaccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacggg 7452056  T
Q  122 gaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacgccttga 221  Q
    | ||||||||||| |||||||||||||  ||||||||| | |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| || ||    
T  7452057 ggatgggagttataacattattaaacagacgattattttgttcattccacacaacccagtcacaaagtagccatataagttgcataaaagaacgtctaga 7452156  T
Q  222 ctttgcaccacttgccaaatgaataaactgaagaaaatg 260  Q
        ||||||| || ||||| | ||||||||||||||||    
T  7452157 aacagcaccacctgtcaaataagtaaactgaagaaaatg 7452195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 12218550 - 12218426
Alignment:
Q  25 agggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatcttgacattatctaacaaacgggga 123  Q
    |||||| ||||||||||| |||||| |||| | | |  |||||||| |||| ||||||||| |||||||||| |||||  | || ||||| ||||||| |    
T  12218550 agggcatgaccaccactgctgagtaccaaaaataaagatagcttttctagctttcaaccaacctaaggacaatatcttttccttgtctaataaacgggaa 12218451  T
Q  124 atgggagttattacattattaaaca 148  Q
    ||| |||||||||||||||||||||    
T  12218450 atgagagttattacattattaaaca 12218426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 2871909 - 2871988
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||| |||||||||  ||||||| || |||| ||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  2871909 acatgattaaacatctgattattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacg 2871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 31216981 - 31216834
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||||| || | |||| |||| |||||||||||||| || || | ||||| || ||||||| | |||||||| | ||||| |||| |||| |||||||    
T  31216981 tttttagcttttagccaacctaaagacaacatcttgaccttttcaagcaaacaggaaatgggaataattacattttaaaacaagcgactattgcgctcat 31216882  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaagaac 214  Q
     |||||||||||| ||| | || ||| |||| |||||||| |||||||    
T  31216881 tccacacaacccaagcataaaggagcgaaatgagttgcatgaaagaac 31216834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 16421406 - 16421351
Alignment:
Q  160 cgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    ||||||| ||||||||||||  |||| |||||||| || |||||||||||||||||    
T  16421406 cgctcattccacacaacccaaacacatagaagccatattagttgcataaaagaacg 16421351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 412787 - 412711
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaaga 212  Q
    |||| ||||||||  || |||||||| |||| ||| ||||||||| |||| |||||| | || ||||||||||||||    
T  412787 acatgattaaacagacggttatttcgttcattccaaacaacccagacacaaagaagcaatattagttgcataaaaga 412711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 7260 - 7473
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||| ||| ||||||||||| || ||| |||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  7260 agccaatacccaaacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 7359  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || |||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| |||||||||||| ||||| |||||||| ||||||    
T  7360 aaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagt 7459  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  7460 tgcataaaagaacg 7473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 45421103 - 45421316
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagctttt-tagccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||| ||||||||||| || ||| || | ||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  45421103 agccaatacccaaacaaacaagagggcatgaccaccactgctgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 45421202  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || ||||||||||| |||||| |||||||||||||||||||||  |||||||| || |||| |||||||||||| ||||| |||||||| ||||||    
T  45421203 aactttgtctaacaaacgtggaatgtgagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagt 45421302  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  45421303 tgcataaaagaacg 45421316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 31086192 - 31085934
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||||||| ||||||| |  |||||||  ||||||||||||||  || |||| ||| | |||||||||| ||| |||||| || |||| |||||| ||||    
T  31086192 agcctatatccaaacaaacaagagggcttgaccaccactgttgtataccaaaaacaaatgtagcttttttagctttcaactaacctaaagacaacgtctt 31086093  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     |  || ||||| ||||  || |||||||| |  ||||||||||||||||| |||||||| | || ||| |||||||||||||| | ||| || || |||    
T  31086092 aatcttgtctaataaacacgggatgggagtaacaacattattaaacatgcggttatttcgttaattccaaacaacccaggcacacaaaaggcatatgagt 31085993  T
Q  202 tgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatg 260  Q
    |||||||||||||| || |  ||  |||||| || ||||||| ||||||| | ||||||    
T  31085992 tgcataaaagaacgtctagcattaccaccacctgacaaatgagtaaactgtaaaaaatg 31085934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 13549793 - 13549922
Alignment:
Q  86 ctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcaca 185  Q
    |||| ||||||||||| |  |||||||| ||||  || ||||| || |  |||| ||||||||  || |||||||| |||| ||||||||||||||||||    
T  13549793 ctaaagacaacatcttaatcttatctaataaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccacacaacccaggcaca 13549892  T
Q  186 gagaagccaaataagttgcataaaagaacg 215  Q
     |||||||||||||||||||||||||||||    
T  13549893 aagaagccaaataagttgcataaaagaacg 13549922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 33547457 - 33547670
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  33547457 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagctt 33547556  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  |||| ||| ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  33547557 aaccttatcaagtaaacaggggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 33547656  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  33547657 tgcataaaagaacg 33547670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 43627083 - 43627297
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt--agccttcaaccaagctaaggacaacatct 100  Q
    |||| ||||||||||| |  ||||||   ||||||||||| |||||  |||| ||| | ||||||||||  ||| ||||||||| |||  ||||||| ||    
T  43627083 agccaatacccaaacaaacaagagggtttgaccaccactgctgagtcccaaaaacaaatgtagctttttttagctttcaaccaacctagagacaacagct 43627182  T
Q  101 tgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataag 200  Q
    | |  |||||||  ||||  || ||||| || |  |||| ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| |||||    
T  43627183 taatcttatctagtaaacaagggatgggggtaacaacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataag 43627282  T
Q  201 ttgcataaaagaacg 215  Q
    |||||||||||||||    
T  43627283 ttgcataaaagaacg 43627297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 31774353 - 31774481
Alignment:
Q  86 ctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcaca 185  Q
    |||| ||||||||||| || ||||| | ||||| |||||||||||| || ||||| ||||||| |||| |||| | ||||| ||||||||| || |||||    
T  31774353 ctaaagacaacatcttaaccttatcaagcaaacagggaatgggagtaataacatttttaaacaagcgactattgccctcattccacacaactcaagcaca 31774452  T
Q  186 gagaagccaaataagttgcataaaagaac 214  Q
     ||||| || || |||||||| |||||||    
T  31774453 aagaagtcagatgagttgcatgaaagaac 31774481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 9949819 - 9949606
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||  |||| ||| | |||||||||| ||| || | |||| |||| |||| || |||    
T  9949819 agccaatacccaaacaaacaagagggcttgaccaccactgctgagtgtcaaaaacaaaggtagcttttttagcttttagccaacctaaagacatcaactt 9949720  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  ||||  || ||||| || |  |||| ||||||||  |||||||| || |||| ||| ||||||||| |||| |||||||| ||||||    
T  9949719 aaccttatcaagtaaacaagggatgggggtaaccacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagt 9949620  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  9949619 tgcataaaagaacg 9949606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 25784588 - 25784640
Alignment:
Q  94 aacatcttgacattatctaacaaacggggaatgggagttattacattattaaa 146  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  25784588 aacatcttgaccttatctaacaatcggggaatgagagttattacattattaaa 25784640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 26180396 - 26180264
Alignment:
Q  86 ctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcaca 185  Q
    |||| |||| |||||| || || ||||| |||||||| |||||||| |  ||||||||| | | |||||||||||| | ||  || ||||| ||||||||    
T  26180396 ctaaagacatcatcttaaccttgtctaataaacgggggatgggagtaacaacattattataaaggcgattatttcgtttatttcatacaactcaggcaca 26180297  T
Q  186 gagaagccaaataagttgcataaaagaacgcct 218  Q
     |||||||| || ||||||| ||||||||||||    
T  26180296 cagaagccatatgagttgcagaaaagaacgcct 26180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 26681466 - 26681670
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagc-tttttagccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  ||||||   |||||||||||||||||  |||| ||| | ||||| |||||||| |||| |||| |||| ||||||| |||    
T  26681466 agccaatacccaaacaaacaagagggtttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacaacaactt 26681565  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  ||||  || ||||| || |  |||| ||||||||  || |||||||| |||| ||| ||||||||| |||| |||||||| || |||    
T  26681566 aaccttatcaagtaaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagt 26681665  T
Q  202 tgcat 206  Q
    |||||    
T  26681666 tgcat 26681670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 46623294 - 46623550
Alignment:
Q  8 atacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatcttgacat 106  Q
    ||||||||||| |  |||||||| ||||||||||  || ||| |||| ||| |||||||||||| ||| ||||||||  |||||||||||||||| || |    
T  46623294 atacccaaacaaacaagagggcatgaccaccactactgggtaccaaaaacaaaagtagcttttttagctttcaaccatcctaaggacaacatcttaacct 46623393  T
Q  107 tatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcat 206  Q
    | |||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||  ||||| ||||| ||||| |||||||| |||||||||||    
T  46623394 tgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgttcatttcacacgacccatgcacaaagaagccatataagttgcat 46623493  T
Q  207 aaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtc 263  Q
    ||||||||| || ||     |||||| || ||||| | |||||||||||||||||||    
T  46623494 aaaagaacgtctagaaacaacaccacctgtcaaataagtaaactgaagaaaatggtc 46623550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 15654240 - 15653999
Alignment:
Q  23 agagggcaagaccaccactgttgagtagcaaacacagaagtagcttt-ttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggg 121  Q
    |||||||| ||||| ||||| || ||| |||| ||| |||||| ||| ||||| ||||||||  |||| ||||||||||| || || |||||||||||||    
T  15654240 agagggcatgaccatcactgctgggtaccaaaaacaaaagtagttttattagctttcaaccatcctaaagacaacatctttaccttgtctaacaaacggg 15654141  T
Q  122 gaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacgccttga 221  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||||||| || ||||| |||||||| |||||||||||||||||||| || ||    
T  15654140 gaatgggagttattacattattaaacagacgattatttcgttcattccacacaactcatgcacaaagaagccatataagttgcataaaagaacgtctaga 15654041  T
Q  222 ctttgcaccacttgccaaatgaataaactgaagaaaatggtc 263  Q
        ||||||| |  ||||| | |||||||||||||||||||    
T  15654040 aacagcaccacctatcaaataagtaaactgaagaaaatggtc 15653999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9546320 - 9546421
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagc-tttttagccttcaaccaagctaaggacaacatc 99  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  9546320 tcagcctatacccaaacacataagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatc 9546419  T
Q  100 tt 101  Q
    ||    
T  9546420 tt 9546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 3104488 - 3104737
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||||||| ||||||| |  ||||||  ||||||||| ||||| ||| ||   ||| | |||||||||| ||| |||| |||| |||| |||||||||||    
T  3104488 agcctatatccaaacaaacaagagggttagaccaccattgttgtgtaccatgaacaaaggtagcttttttagctttcagccaacctaaagacaacatctt 3104587  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || || |||| |||||  |||||||||||||| |||| |||||| | |||||| ||||| |||| ||| ||||| |||||||| | ||| || |  |||    
T  3104588 aaccttgtctagcaaacatggaatgggagttataacatcattaaataggcgattgtttcgttcattccaaacaacacaggcacacataagacataatagt 3104687  T
Q  202 tgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactg 251  Q
    |||||||||||||| || |  || |||||||||| |||||||||||||||    
T  3104688 tgcataaaagaacgtctagcattagcaccacttgtcaaatgaataaactg 3104737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 12379215 - 12379067
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||||| |||| |||| |||| ||||||| ||| ||||| ||||| |||| ||| |||||||| | |||||||||||||| ||  |||||||| ||||    
T  12379215 tttttagctttcagccaacctaaagacaacaacttaacattgtctaataaacaggggatgggagtaactacattattaaacaggcatttatttcgttcat 12379116  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
     ||||||||| |||||||| |||||||| |  |||||||||||||||||    
T  12379115 tccacacaacgcaggcacacagaagccatacgagttgcataaaagaacg 12379067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 21277606 - 21277460
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||| ||||||||||| || ||| |||| ||| |  ||||||||| ||| ||||||||| ||||||||||||||||    
T  21277606 agccaatacccaaacaaacaagagggcatgaccaccactgctgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctt 21277507  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaaca 148  Q
     || || |||||||||||| | || ||||||||||||||||||||||    
T  21277506 taccttgtctaacaaacggaggataggagttattacattattaaaca 21277460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 13439638 - 13439851
Alignment:
Q  3 agcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatctt 101  Q
    |||| ||||||||||| |  |||||||  ||||| ||||| |||||  |||| ||| | |||||||||| ||| ||||||||| |||  ||||||| |||    
T  13439638 agccaatacccaaacaaacaagagggcttgaccaacactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagctt 13439737  T
Q  102 gacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagt 201  Q
     || ||||| |  |||| ||| ||||| || |  || | ||||||||| || ||||| || |||| ||| |||||||||||||| |||||||| || |||    
T  13439738 aaccttatcaagtaaacaggggatgggggtaacaacgtgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagt 13439837  T
Q  202 tgcataaaagaacg 215  Q
    ||||||||||||||    
T  13439838 tgcataaaagaacg 13439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 272
Target Start/End: Original strand, 43104961 - 43105166
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaacatgcgattatttcgctcat 166  Q
    |||||||| ||||||||  |||| || |||||||| || || ||||| ||||||||||||||||| |  ||||||||||||| |||||| ||| | ||||    
T  43104961 tttttagctttcaaccatcctaaagaaaacatcttaaccttgtctaataaacggggaatgggagtaaccacattattaaacaggcgattgttttgttcat 43105060  T
Q  167 cccacacaacccaggcacagagaagccaaataagttgcataaaagaacgccttgactttgcaccacttgccaaatgaataaactgaagaaaatggtcata 266  Q
     ||| |||| ||| || || | ||||||||| |||| ||||||||  || |  |   |  |||||| || ||||||| ||||||| |||||||||||| |    
T  43105061 tccaaacaagccaagcgcacaaaagccaaatgagttacataaaagcccgtcgagctctaccaccacctgtcaaatgagtaaactgcagaaaatggtcaga 43105160  T
Q  267 tatatt 272  Q
    ||||||    
T  43105161 tatatt 43105166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 28327075 - 28327154
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 215  Q
    |||| ||||||||| || ||||| || |||| ||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  28327075 acatgattaaacattcggttattacgttcattccaaacaacccaagcacaaagaagccaaataagttgcataaaagaacg 28327154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 45942588 - 45942647
Alignment:
Q  154 ttatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaaagaa 213  Q
    |||||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  45942588 ttatttcgttcattccacacaacccagacacaaagaagccaaattagttgcataaaagaa 45942647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 968182 - 968256
Alignment:
Q  121 ggaatgggagttattacattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaa 195  Q
    ||||||||||| |||||||| ||||||| |||| |||| ||||||| ||||||||||||  ||||||| ||||||    
T  968182 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 968256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 30385919 - 30385992
Alignment:
Q  136 acattattaaacatgcgattatttcgctcatcccacacaacccaggcacagagaagccaaataagttgcataaa 209  Q
    |||| ||||||||| || ||||| || |||| ||| ||||||||| |||| |||||||| ||||||||||||||    
T  30385919 acatgattaaacatacggttattacgttcattccaaacaacccagacacatagaagccatataagttgcataaa 30385992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22770 - 22624
Alignment:
Q  1 tcagcctatacccaaacacatgagagggcaagaccaccactgttgagtagcaaacacagaagtagcttttt-agccttcaaccaagctaaggacaacatc 99  Q
    |||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||| |||| | ||||| ||| ||||| |||||||| ||||||||     
T  22770 tcagcctatacccaaatacataagagggcaagaccaccactgctgagtaccaaacacaaaagtggtttttttagctttcaatcaagctaaagacaacatt 22671  T
Q  100 ttgacattatctaacaaacggggaatgggagttattacattattaaa 146  Q
    ||||| | ||||||||||||| ||||| |||||||||||||||||||    
T  22670 ttgacctaatctaacaaacggagaatgagagttattacattattaaa 22624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 12360 - 12279
Alignment:
Q  67 tttttagccttcaaccaagctaaggacaacatcttgacattatctaacaaacggggaatgggagttattacattattaaaca 148  Q
    |||||||| ||||||||| |||||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||    
T  12360 tttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgggggataggagttattacattattaaaca 12279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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