View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_99 (Length: 276)
Name: NF6819A_low_99
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18314727 - 18314990
Alignment:
| Q |
1 |
tcaatgattaagaacataactaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcac |
100 |
Q |
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| T |
18314727 |
tcaatgattaagaacataactaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcac |
18314826 |
T |
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| Q |
101 |
agatctaactgtattgaactttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtaacaaa |
200 |
Q |
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| T |
18314827 |
agatctaactgtattgaactttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtgacaaa |
18314926 |
T |
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| Q |
201 |
aaagtactagcaattgaacgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
264 |
Q |
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| T |
18314927 |
aaagtactagcaatcgaacgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
18314990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 18304358 - 18304447
Alignment:
| Q |
176 |
caaattaagacactactgtaacaaaaaa-gtactagcaattgaacgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
264 |
Q |
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| T |
18304358 |
caaattaagatactactatgacaaaaaaagcactagcaattgaacgaattacttgcgacagtatcttctgcacttgataaactagatatt |
18304447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 18304263 - 18304295
Alignment:
| Q |
103 |
atctaactgtattgaactttcagattccagagt |
135 |
Q |
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| T |
18304263 |
atctaactgtattgaactttcagattccagagt |
18304295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18304194 - 18304235
Alignment:
| Q |
49 |
ataaaagaaaccttcatagacccatgtagcaaaatttctttt |
90 |
Q |
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| T |
18304194 |
ataaaagaaaccttcatagagacatgtagcaaaacttctttt |
18304235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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