View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_high_1 (Length: 560)
Name: NF6819_high_1
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 533
Target Start/End: Original strand, 18047674 - 18048178
Alignment:
| Q |
15 |
gacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcatccaagta |
114 |
Q |
| |
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||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |
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| T |
18047674 |
gacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcatgcaagaa |
18047772 |
T |
|
| Q |
115 |
cttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaag |
214 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
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| T |
18047773 |
cttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggtagccttgtgttgatatttt-ttgttattttag |
18047863 |
T |
|
| Q |
215 |
aggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgac |
314 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
18047864 |
agcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagctcaattcaataacgtcttatattcggattgac |
18047963 |
T |
|
| Q |
315 |
gttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaattcatccac |
414 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
18047964 |
gttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatt--tatatatttttccttttgaatttatctctggtttactaattcatccac |
18048061 |
T |
|
| Q |
415 |
ctgttagcctataatttcgacggactgatttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
514 |
Q |
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| T |
18048062 |
ctgttagcctataatttcgacaggttgatttaatgcagt--aaaagttggctttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
18048159 |
T |
|
| Q |
515 |
gagagtttgggatttagta |
533 |
Q |
| |
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| ||||||||||||||||| |
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| T |
18048160 |
gggagtttgggatttagta |
18048178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 533
Target Start/End: Complemental strand, 4397652 - 4397148
Alignment:
| Q |
15 |
gacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcatccaagta |
114 |
Q |
| |
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||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |
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| T |
4397652 |
gacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcatgcaagaa |
4397554 |
T |
|
| Q |
115 |
cttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaag |
214 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
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| T |
4397553 |
cttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggtagccttgtgttgatatttt-ttgttattttag |
4397463 |
T |
|
| Q |
215 |
aggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgac |
314 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
4397462 |
agcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagctcaattcaataacgtcttatattcggattgac |
4397363 |
T |
|
| Q |
315 |
gttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaattcatccac |
414 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
4397362 |
gttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatt--tatatatttttccttttgaatttatctctggtttactaattcatccac |
4397265 |
T |
|
| Q |
415 |
ctgttagcctataatttcgacggactgatttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
514 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4397264 |
ctgttagcctataatttcgacaggttgatttaatgcagt--aaaagttggctttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
4397167 |
T |
|
| Q |
515 |
gagagtttgggatttagta |
533 |
Q |
| |
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| ||||||||||||||||| |
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| T |
4397166 |
gggagtttgggatttagta |
4397148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 131 - 337
Target Start/End: Complemental strand, 4459095 - 4458890
Alignment:
| Q |
131 |
ttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcg |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||||| ||| |||||||||| || |||||||||||| |
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| T |
4459095 |
ttctttggtgttgatttgtagaggtgtggtggttggcattggcatcatgggtaaccttgtgttgatgcttt-ttgttatttaggaacttgttgtatttct |
4458997 |
T |
|
| Q |
231 |
ttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgacgttttattaataaaat |
330 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4458996 |
ttgttgcttttagaagtttacgactacaacaatattgtttttttgcattagctcaattcaataacgtcttatatttggattgacgttttattaataaaat |
4458897 |
T |
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| Q |
331 |
ttgttgt |
337 |
Q |
| |
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||||||| |
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| T |
4458896 |
ttgttgt |
4458890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 4458831 - 4458775
Alignment:
| Q |
349 |
gttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaatt |
407 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
4458831 |
gttgaatttcattatttatatat--ttttccttttgaatttatgtctggtttactaatt |
4458775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 4499043 - 4499097
Alignment:
| Q |
35 |
gtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactg |
89 |
Q |
| |
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|||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
4499043 |
gtaaccttgtatctttgcagaaactttgcatttctaactgcttatcattaaactg |
4499097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 36498317 - 36498386
Alignment:
| Q |
444 |
ttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagattt |
513 |
Q |
| |
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||||||||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
36498317 |
ttaatgcagtcaatgagttgaccttttgttctttcaagaattaaaaatatcatttctagcatgaagattt |
36498386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 333
Target Start/End: Complemental strand, 1026276 - 1026100
Alignment:
| Q |
157 |
tggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcgttgttgcttttagaagtttactgcta |
256 |
Q |
| |
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||||||| || |||||||||||| || ||||||| ||| |||| |||||||||| | | ||||||| |||| |||||||||| | ||||||||||| |
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|
| T |
1026276 |
tggtggtggatattggcatcatgagttgccttgtgttggagtttt-ttgttatttaggtgcttgttgtgtttctttgttgctttcgggtgtttactgcta |
1026178 |
T |
|
| Q |
257 |
caacaata-ttgttttcttgcattagcccaattcaataacgtcttatattcagattgacgttttattaataaaatttg |
333 |
Q |
| |
|
| || || ||||| | ||| ||| |||||||| |||| ||||||||||| ||||| | |||||||||||||||| |
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|
| T |
1026177 |
tagcagtacttgttcttttgtattggcccaatttgataatgtcttatattcggattgttgcattattaataaaatttg |
1026100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 513
Target Start/End: Original strand, 33378967 - 33379066
Alignment:
| Q |
416 |
tgttagcctataatttcgacggactgatttaatgcagtcaa--agagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagattt |
513 |
Q |
| |
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||||||||| |||||||||| || | ||||||||||||| ||||||| ||||||| ||||||| |||||||| ||| || ||||||||||||||| |
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| T |
33378967 |
tgttagcctgtaatttcgacatgctcaattaatgcagtcaatgagagttgattttttgttctttcaagaattaaagatgatgtttctagcatgaagattt |
33379066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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