View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819_high_4 (Length: 387)

Name: NF6819_high_4
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819_high_4
NF6819_high_4
[»] chr3 (3 HSPs)
chr3 (251-387)||(51420906-51421042)
chr3 (251-368)||(51421562-51421678)
chr3 (279-345)||(49287770-49287838)
[»] chr1 (2 HSPs)
chr1 (251-387)||(38931995-38932131)
chr1 (251-368)||(38931359-38931475)
[»] chr5 (4 HSPs)
chr5 (117-247)||(38690555-38690685)
chr5 (134-214)||(38703425-38703507)
chr5 (286-334)||(32944404-32944452)
chr5 (274-306)||(38064839-38064871)
[»] chr8 (4 HSPs)
chr8 (251-352)||(13934955-13935056)
chr8 (251-368)||(37562340-37562456)
chr8 (297-376)||(37562938-37563017)
chr8 (281-309)||(1487662-1487690)
[»] chr2 (1 HSPs)
chr2 (279-363)||(4386088-4386173)
[»] chr4 (1 HSPs)
chr4 (286-334)||(33370795-33370843)
[»] chr7 (3 HSPs)
chr7 (286-334)||(32548591-32548641)
chr7 (279-331)||(35770357-35770411)
chr7 (274-306)||(8464465-8464497)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 387
Target Start/End: Original strand, 51420906 - 51421042
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420906 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 51421005  T
Q  351 aaacccataaccagcaactaatcaaaaccaccgtccc 387  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51421006 aaacccataaccagcaactcatcaaaaccaccgtccc 51421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 51421678 - 51421562
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  51421678 aagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 51421580  T
Q  351 aaacccataaccagcaac 368  Q
     ||||||  |||||||||    
T  51421579 caacccaccaccagcaac 51421562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 49287770 - 49287838
Alignment:
Q  279 tcttatcatacactctcaacactatatttt--tgtcactatcttccactaccatctctttcattcatcc 345  Q
    |||||||||||||||||||||| | |||||  |||||||||||||||| |||||| || || |||||||    
T  49287770 tcttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatcc 49287838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 387
Target Start/End: Complemental strand, 38932131 - 38931995
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932131 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 38932032  T
Q  351 aaacccataaccagcaactaatcaaaaccaccgtccc 387  Q
    ||||||||||||||||||| |||||||||||||||||    
T  38932031 aaacccataaccagcaactcatcaaaaccaccgtccc 38931995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 38931359 - 38931475
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  38931359 aagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 38931457  T
Q  351 aaacccataaccagcaac 368  Q
     ||||||  |||||||||    
T  38931458 caacccaccaccagcaac 38931475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 38690685 - 38690555
Alignment:
Q  117 attagacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgcaacttacc 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38690685 attaaacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgtaacttacc 38690586  T
Q  217 tgacctggtcttcgattttatagtcccaatc 247  Q
    |||| | ||||||||||||||||||||||||    
T  38690585 tgacatcgtcttcgattttatagtcccaatc 38690555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 38703507 - 38703425
Alignment:
Q  134 aagaagaaaataatggtggtgttt-ggggtattt-tctcttgttcctctcaagttttttcttatgattttttcgtgcaactta 214  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38703507 aagaagaaaataatggtggtgttttggggtgtttctctcttgttcctctcaagttttttcctatgattttttcgtgtaactta 38703425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 32944452 - 32944404
Alignment:
Q  286 atacactctcaacactatatttttgtcactatcttccactaccatctct 334  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctct 32944404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 38064871 - 38064839
Alignment:
Q  274 tacaatcttatcatacactctcaacactatatt 306  Q
    |||||||||||||||||||| ||||||||||||    
T  38064871 tacaatcttatcatacactcccaacactatatt 38064839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 13935056 - 13934955
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13935056 aagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 13934957  T
Q  351 aa 352  Q
    ||    
T  13934956 aa 13934955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 37562340 - 37562456
Alignment:
Q  251 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  37562340 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 37562438  T
Q  351 aaacccataaccagcaac 368  Q
     ||||||  |||||||||    
T  37562439 caacccaccaccagcaac 37562456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 37563017 - 37562938
Alignment:
Q  297 acactatatttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataaccagcaactaatcaaa 376  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcctccacaaacccctaaccagcgactcatcaaa 37562938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  281 ttatcatacactctcaacactatattttt 309  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 4386173 - 4386088
Alignment:
Q  279 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataacca 363  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||| |||||| || || ||||||| |||| ||||||| ||||    
T  4386173 tcttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatcc-ccaccaacccatcacca 4386088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 33370843 - 33370795
Alignment:
Q  286 atacactctcaacactatatttttgtcactatcttccactaccatctct 334  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33370843 atacaccctcaacactagattattgtcactatcttccactaccatctct 33370795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 32548641 - 32548591
Alignment:
Q  286 atacactctcaacactatatt--tttgtcactatcttccactaccatctct 334  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctct 32548591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 35770357 - 35770411
Alignment:
Q  279 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatc 331  Q
    |||||||||||||||||||||| | |  |||||||||||||||||||| ||||||    
T  35770357 tcttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatc 35770411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 8464465 - 8464497
Alignment:
Q  274 tacaatcttatcatacactctcaacactatatt 306  Q
    |||||||||||||||||||| ||||||||||||    
T  8464465 tacaatcttatcatacactcccaacactatatt 8464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University