View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819_high_8 (Length: 239)

Name: NF6819_high_8
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819_high_8
NF6819_high_8
[»] chr4 (16 HSPs)
chr4 (1-222)||(18048592-18048813)
chr4 (7-86)||(23132771-23132850)
chr4 (12-86)||(29406383-29406458)
chr4 (1-87)||(43627219-43627306)
chr4 (7-86)||(6170933-6171013)
chr4 (7-86)||(25224498-25224578)
chr4 (12-83)||(40486470-40486542)
chr4 (12-86)||(2629605-2629680)
chr4 (12-86)||(11294807-11294882)
chr4 (12-86)||(51890823-51890898)
chr4 (183-217)||(18935673-18935707)
chr4 (1-61)||(28715741-28715803)
chr4 (12-61)||(51777895-51777945)
chr4 (12-76)||(38848089-38848154)
chr4 (12-83)||(42081764-42081836)
chr4 (119-159)||(47320650-47320690)
[»] chr3 (19 HSPs)
chr3 (1-222)||(4396513-4396734)
chr3 (1-86)||(9685022-9685108)
chr3 (10-87)||(46817318-46817396)
chr3 (12-86)||(4227713-4227788)
chr3 (12-86)||(26880203-26880278)
chr3 (1-86)||(46844929-46845015)
chr3 (183-222)||(21290002-21290042)
chr3 (12-86)||(19222555-19222630)
chr3 (12-86)||(24303416-24303491)
chr3 (12-86)||(49443392-49443467)
chr3 (1-86)||(38949700-38949786)
chr3 (2-40)||(49284895-49284933)
chr3 (183-217)||(51303827-51303861)
chr3 (2-39)||(36729523-36729560)
chr3 (1-57)||(39709094-39709151)
chr3 (14-86)||(43280094-43280167)
chr3 (12-87)||(5173979-5174055)
chr3 (11-61)||(32732504-32732556)
chr3 (7-39)||(54288100-54288132)
[»] chr6 (6 HSPs)
chr6 (9-86)||(9689269-9689347)
chr6 (12-86)||(24319039-24319114)
chr6 (1-38)||(17224207-17224244)
chr6 (12-72)||(28222903-28222964)
chr6 (12-76)||(34574123-34574188)
chr6 (12-40)||(3298936-3298964)
[»] chr7 (5 HSPs)
chr7 (1-61)||(40200768-40200829)
chr7 (11-86)||(41331047-41331123)
chr7 (12-86)||(28059772-28059847)
chr7 (7-83)||(27788298-27788375)
chr7 (7-83)||(27791454-27791531)
[»] chr1 (9 HSPs)
chr1 (8-87)||(7000927-7001007)
chr1 (1-86)||(26909828-26909914)
chr1 (1-86)||(37280728-37280813)
chr1 (1-87)||(10632719-10632807)
chr1 (12-86)||(31124607-31124682)
chr1 (15-83)||(24910450-24910519)
chr1 (12-61)||(42727006-42727055)
chr1 (14-85)||(11860069-11860141)
chr1 (1-60)||(24875023-24875083)
[»] chr2 (5 HSPs)
chr2 (2-87)||(3596275-3596361)
chr2 (12-86)||(1964379-1964454)
chr2 (1-85)||(39635327-39635413)
chr2 (12-72)||(40363040-40363101)
chr2 (12-40)||(42480216-42480244)
[»] chr8 (6 HSPs)
chr8 (1-46)||(41458362-41458407)
chr8 (120-217)||(37971098-37971195)
chr8 (12-86)||(550327-550402)
chr8 (12-86)||(12770394-12770469)
chr8 (12-86)||(41272120-41272195)
chr8 (7-61)||(8183371-8183427)
[»] scaffold0246 (1 HSPs)
scaffold0246 (12-83)||(24409-24481)
[»] chr5 (4 HSPs)
chr5 (12-86)||(23155919-23155994)
chr5 (12-86)||(37553894-37553969)
chr5 (12-86)||(37684515-37684590)
chr5 (7-95)||(24456206-24456294)
[»] scaffold0038 (1 HSPs)
scaffold0038 (12-72)||(23401-23462)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18048592 - 18048813
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtcttaccaattaaat 99  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18048592 ctagtaggtgaagctcacgcatttaaatatggagaagtggagtgtccggagttcgaacctcgccctctgcataaattaagcaatgtcttaccaattaaat 18048691  T
Q  100 atttctactttatctaacctcaacttctctttaagttttctttctttttcgctcgtcgaggagtggttttaggttannnnnnngacctagaatcaccccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||| ||||    
T  18048692 atttctactttatctaacctcaacttctctttaagttttctttctctttcgctcgtcgaggagtggttttaggttatttttttgacctagaatca-cccc 18048790  T
Q  200 tgcatcttttttccccttctttc 222  Q
    |||||||||||||||||||||||    
T  18048791 tgcatcttttttccccttctttc 18048813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 23132771 - 23132850
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtcggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||  | || ||||||||| ||||||||    
T  23132771 gctggagctcacacatttaaatatggagaagtgggtgtccggagttcgaaccccgatccctgcataaattatgcaatgtc 23132850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 29406458 - 29406383
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| ||||||||||| ||||| ||||||||||||||| || || ||||||||| ||||||||    
T  29406458 agctcacacaattaaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtc 29406383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43627219 - 43627306
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    |||||||||  |||||||||| ||||||||||||||||||| ||| | | ||| |||||||| || || ||||||||| |||||||||    
T  43627219 ctagtagctagagctcacacaattaaatatggagaagtggagtgtccagggtttgaaccccgacccctgcataaattatgcaatgtct 43627306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 6170933 - 6171013
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtcggag-ttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||| |||||||| |||||| ||||||||| || |||| ||| ||||||||||  || |||||||||||| ||||||||    
T  6170933 gctgaaactcacacaattaaatgtggagaagtagagtgtctgaggttcgaaccccagcccctacataaattatgcaatgtc 6171013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 25224578 - 25224498
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtcgga-gttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||||||||| |||||||| ||||||||  |||| || |||||||| ||| || || ||||||||| ||||||||    
T  25224578 gctgaagctcacacatataaatatgaagaagtggggtgtccgaggttcgaactccgacccctgcataaattatgcaatgtc 25224498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 40486542 - 40486470
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaat 83  Q
    ||||||||||||||||| || ||||||||| ||| ||| |||||||||||| || || ||||||||| |||||    
T  40486542 agctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaat 40486470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 2629680 - 2629605
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||| ||||||||    
T  2629680 agctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatgcaatgtc 2629605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11294807 - 11294882
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||| |||||||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||| ||||||||    
T  11294807 agctcaaacatttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 11294882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 51890898 - 51890823
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  |||| || |||||||||||| || || ||||||||| ||||||||    
T  51890898 agctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 51890823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 18935673 - 18935707
Alignment:
Q  183 gacctagaatcaccccctgcatcttttttcccctt 217  Q
    ||||||||||||||| |||||||||||||||||||    
T  18935673 gacctagaatcaccctctgcatcttttttcccctt 18935707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28715803 - 28715741
Alignment:
Q  1 ctagtagctgaagctcacaca-tttaaatatggagaagtggattgt-cggagttcgaaccccg 61  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| ||| ||| ||||||||||||    
T  28715803 ctagtggctgaagctcacacattttaaatgtggagaagtggagtgtccggggttcgaaccccg 28715741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 51777945 - 51777895
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccg 61  Q
    ||||||||||||||||| |||||||||||  ||| ||||||||||||||||    
T  51777945 agctcacacatttaaatgtggagaagtgggatgtccggagttcgaaccccg 51777895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 38848089 - 38848154
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaatt 76  Q
    ||||||||||||||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||    
T  38848089 agctcacacatttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaatt 38848154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 42081836 - 42081764
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtcggag-ttcgaaccccgccctctacataaattaagcaat 83  Q
    |||||||||| |||||| |||||||||||| ||||  || ||||||||||  || |||||||||||| |||||    
T  42081836 agctcacacaattaaatgtggagaagtggagtgtccaagattcgaaccccagcccctacataaattatgcaat 42081764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 47320690 - 47320650
Alignment:
Q  119 tcaacttctctttaagttttctttctttttcgctcgtcgag 159  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  47320690 tcaacttctctttaagttttccttctctttcgctcatcgag 47320650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4396734 - 4396513
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtcttaccaattaaat 99  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  4396734 ctagtaggtgaagctcacgcatttaaatatggagaagtggagtgtccggagttcgaacctcgccctctgcataaattaagcaatgtcttaccaattaaat 4396635  T
Q  100 atttctactttatctaacctcaacttctctttaagttttctttctttttcgctcgtcgaggagtggttttaggttannnnnnngacctagaatcaccccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||| ||||    
T  4396634 atttctactttatctaacctcaacttctctttaagttttctttctctttcgctcgtcgaggagtggttttaggttatttttttgacctagaatca-cccc 4396536  T
Q  200 tgcatcttttttccccttctttc 222  Q
    |||||||||||||||||||||||    
T  4396535 tgcatcttttttccccttctttc 4396513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9685108 - 9685022
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattg-tcggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||| |||| |||||||||||||||||||||||||||||| || ||||  ||||||||||  || || ||||||||| ||||||||    
T  9685108 ctagtggctggagctcacacatttaaatatggagaagtggagtgttcgggattcgaaccccagcccctgcataaattatgcaatgtc 9685022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 46817318 - 46817396
Alignment:
Q  10 gaagctcacacatttaaatatggagaagtggattg-tcggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    ||||||||||||||||||| |||||||||||  || |||| |||| ||||||  ||||||||||||||| |||||||||    
T  46817318 gaagctcacacatttaaatgtggagaagtggggtgttcggggttcaaaccccaacctctacataaattatgcaatgtct 46817396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 4227713 - 4227788
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||| |||||||||||||  |||| ||||||||||||||| || || ||||||||| ||||||||    
T  4227713 agctcacacaattaattatggagaagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtc 4227788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 26880278 - 26880203
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||||| |||||||||||  |||| | ||||||||||||| || || ||||||||| ||||||||    
T  26880278 agctcacacatttaaatgtggagaagtggggtgtctgaagttcgaaccccgacccctgcataaattatgcaatgtc 26880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46844929 - 46845015
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| ||||||||||||||||| ||||||||| |  ||| ||| |||||||| ||| || || ||||||||| ||||||||    
T  46844929 ctagtagctggagctcacacatttaaatgtggagaagtagggtgtccggggttcgaactccgacccctgcataaattatgcaatgtc 46845015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 21290042 - 21290002
Alignment:
Q  183 gacctagaatcacccc-ctgcatcttttttccccttctttc 222  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  21290042 gacctagaatcacccctctgcatcttttttccccttctttc 21290002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 19222555 - 19222630
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||| ||||||||    
T  19222555 agctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 19222630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24303491 - 24303416
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  |||| || |||||||||||| || || ||||||||| ||||||||    
T  24303491 agctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 24303416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 49443392 - 49443467
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||||| |||||||||||  ||| ||| |||||||| ||| || || ||||||||| ||||||||    
T  49443392 agctcacacatttaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtc 49443467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38949786 - 38949700
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||| |||| |||||||||  |||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||| ||||||||    
T  38949786 ctagtggctggagctcacactattaaatgtggagaagtggggtgttcggggttcgaaccccggcccctgcataaattatgcaatgtc 38949700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 49284933 - 49284895
Alignment:
Q  2 tagtagctgaagctcacacatttaaatatggagaagtgg 40  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  49284933 tagtagctgaagctcacacaattaaatgtggagaagtgg 49284895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 51303861 - 51303827
Alignment:
Q  183 gacctagaatcaccccctgcatcttttttcccctt 217  Q
    ||||||||||||||| |||||||||||||||||||    
T  51303861 gacctagaatcaccctctgcatcttttttcccctt 51303827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 36729560 - 36729523
Alignment:
Q  2 tagtagctgaagctcacacatttaaatatggagaagtg 39  Q
    |||||||||||||||||| | |||||||||||||||||    
T  36729560 tagtagctgaagctcacataattaaatatggagaagtg 36729523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39709151 - 39709094
Alignment:
Q  1 ctagtagctgaagctcacacattt-aaatatggagaagtggattgtcggagttcgaac 57  Q
    ||||| |||| ||||||||||||| |||| |||||||||||| |||||| ||||||||    
T  39709151 ctagtggctggagctcacacattttaaatgtggagaagtggagtgtcggggttcgaac 39709094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 43280167 - 43280094
Alignment:
Q  14 ctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||| |||||||||||  ||| |||  ||||||||||| || || ||||||||| ||||||||    
T  43280167 ctcacacatttaaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatgcaatgtc 43280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5173979 - 5174055
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattg-tcggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    |||||||||| |||||| |||||||||||  || |||| |||||||||||  || || ||||||||| |||||||||    
T  5173979 agctcacacaattaaatgtggagaagtggggtgttcggggttcgaacccctgcccctgcataaattatgcaatgtct 5174055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 32732504 - 32732556
Alignment:
Q  11 aagctcacaca-tttaaatatggagaagtggattgt-cggagttcgaaccccg 61  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  32732504 aagctcacacaatttaattatggagaagtggagtgtccggagttcgaaccccg 32732556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 54288100 - 54288132
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtg 39  Q
    ||||||||||||||| |||||||||||||||||    
T  54288100 gctgaagctcacacaattaaatatggagaagtg 54288132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 9689269 - 9689347
Alignment:
Q  9 tgaagctcacacatttaaatatggagaagtggattgtcg-gagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||||||||||||||||||| |||||  ||||  | |||||||||||| ||||||||||||||| ||||||||    
T  9689269 tgaagctcacacatttaaatatggaggagtggggtgtccagggttcgaaccccgacctctacataaattatgcaatgtc 9689347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24319114 - 24319039
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||| | |||||||||||| |||| || |||||||||||| || || ||||||||| ||||||||    
T  24319114 agctcacacaattaattgtggagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 24319039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17224244 - 17224207
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagt 38  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  17224244 ctagtggctgaagctcacacaattaaatatggagaagt 17224207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 28222964 - 28222903
Alignment:
Q  12 agctcacaca-tttaaatatggagaagtggattgtcggagttcgaaccccgccctctacata 72  Q
    |||||||||| ||||| |||||||||||||| |||| | |||||||||||| ||||| ||||    
T  28222964 agctcacacaatttaattatggagaagtggagtgtccgggttcgaaccccggcctctgcata 28222903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 34574123 - 34574188
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattg-tcggagttcgaaccccgccctctacataaatt 76  Q
    ||||||||||||||||| |||||||||||  || |||| ||| |||||||| ||||| ||||||||    
T  34574123 agctcacacatttaaatgtggagaagtggggtgttcggggtttgaaccccgacctctgcataaatt 34574188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 3298936 - 3298964
Alignment:
Q  12 agctcacacatttaaatatggagaagtgg 40  Q
    |||||||||||||||||||||||||||||    
T  3298936 agctcacacatttaaatatggagaagtgg 3298964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40200829 - 40200768
Alignment:
Q  1 ctagtagctgaagctcacacattt-aaatatggagaagtggattgtcggagttcgaaccccg 61  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  40200829 ctagtggctgaagctcacacattttaaatatggagaagtggagtgtcggggttcgaaccccg 40200768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 41331047 - 41331123
Alignment:
Q  11 aagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||| |||||| |||||||||||  ||| |||| ||||||||||| || || ||||||||| ||||||||    
T  41331047 aagctcacacaattaaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtc 41331123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28059847 - 28059772
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||||| ||||||| |||  ||| | |||||||||||||| || || ||||||||| ||||||||    
T  28059847 agctcacacatttaaatgtggagaattggggtgttcagagttcgaaccccggcccctgcataaattatgcaatgtc 28059772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 27788375 - 27788298
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaat 83  Q
    |||| |||||| |||||||||| |||||||||||  |||| || |||||||||||| || || ||||||||| |||||    
T  27788375 gctggagctcatacatttaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatgcaat 27788298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 27791531 - 27791454
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaat 83  Q
    |||| |||||| |||||||||| |||||||||||  |||| || |||||||||||| || || ||||||||| |||||    
T  27791531 gctggagctcatacatttaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatgcaat 27791454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 7000927 - 7001007
Alignment:
Q  8 ctgaagctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    |||||||||||||| |||||| |||||||||||  |||| ||||||||||||||| |||||| |||||||| | |||||||    
T  7000927 ctgaagctcacacaattaaatgtggagaagtggggtgtccggagttcgaaccccggcctctaaataaattatgtaatgtct 7001007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26909828 - 26909914
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||| |||||||||||||||||||||| |||||||||||  ||| | | |||||||||||  ||||| ||||||||| ||||||||    
T  26909828 ctagtggctgaagctcacacatttaaatgtggagaagtggggtgtccagggttcgaacccccgcctctgcataaattatgcaatgtc 26909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37280813 - 37280728
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgtcggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||| |||| |||||||||| |||||| |||||||||||  || ||||||||||| |||| || ||| |||||||| ||||||||    
T  37280813 ctagtggctggagctcacacaattaaatgtggagaagtggggtgccggagttcgaatcccgacccctatataaattatgcaatgtc 37280728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 10632807 - 10632719
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggat-tgtc-ggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    ||||| || ||||||||||||||||||| |||||||||||   |||| || |||||||||||| || || ||||||||| |||||||||    
T  10632807 ctagtggcggaagctcacacatttaaatgtggagaagtgggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtct 10632719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 31124607 - 31124682
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  | || ||||||||||||||| || || ||||||||| ||||||||    
T  31124607 agctcacacaattaaatgtggagaagtggggtatccggagttcgaaccccggcccctgcataaattatgcaatgtc 31124682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 24910450 - 24910519
Alignment:
Q  15 tcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaat 83  Q
    ||||||| ||||||||||||||||||| ||| ||| |||||||||| | || || ||||||||| |||||    
T  24910450 tcacacaattaaatatggagaagtggagtgtccggggttcgaaccctgacccctgcataaattatgcaat 24910519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 42727055 - 42727006
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtcggagttcgaaccccg 61  Q
    ||||| |||||||||||||||| ||||||  |||| ||||||||||||||    
T  42727055 agctcgcacatttaaatatggaaaagtgggatgtcagagttcgaaccccg 42727006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 11860141 - 11860069
Alignment:
Q  14 ctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgt 85  Q
    |||||||| |||||| |||||||||||  |||| || |||||||||||| || ||| |||||||| |||||||    
T  11860141 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctatataaattatgcaatgt 11860069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24875083 - 24875023
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgtcgga-gttcgaacccc 60  Q
    ||||| |||| |||||||||| ||||||||||||||||||  |||| || |||||||||||    
T  24875083 ctagtggctggagctcacacaattaaatatggagaagtggggtgtccgaggttcgaacccc 24875023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 3596361 - 3596275
Alignment:
Q  2 tagtagctgaagctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtct 87  Q
    |||| |||| |||||||||| |||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||| |||||||||    
T  3596361 tagtggctggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtct 3596275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 1964454 - 1964379
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| ||||||||||||||||||  ||| ||| ||| |||||||| || || ||||||||| ||||||||    
T  1964454 agctcacacaattaaatatggagaagtggggtgtccggggtttgaaccccggcccctgcataaattatgcaatgtc 1964379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 39635413 - 39635327
Alignment:
Q  1 ctagtagctgaagctcacacattt-aaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgt 85  Q
    ||||| |||| || |||||||||| |||| |||||||||||| |||| ||||||||||||||| || | ||||| |||| |||||||    
T  39635413 ctagtggctggagatcacacattttaaatgtggagaagtggagtgtctggagttcgaaccccgaccccaacatatattatgcaatgt 39635327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 40363040 - 40363101
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacata 72  Q
    |||||||||| |||||||||||||||| || |||| || |||||||||||| || |||||||    
T  40363040 agctcacacaattaaatatggagaagtagagtgtcgggggttcgaaccccgacccctacata 40363101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 42480216 - 42480244
Alignment:
Q  12 agctcacacatttaaatatggagaagtgg 40  Q
    |||||||||||||||||||||||||||||    
T  42480216 agctcacacatttaaatatggagaagtgg 42480244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41458407 - 41458362
Alignment:
Q  1 ctagtagctgaagctcacacatttaaatatggagaagtggattgtc 46  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||    
T  41458407 ctagtggctgaagctcacacatttaaatgtggagaagtggagtgtc 41458362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 37971098 - 37971195
Alignment:
Q  120 caacttctctttaagttttctttctttttcgctcgtcgaggagtggttttaggttannnnnnngacctagaatcacccc-ctgcatcttttttcccctt 217  Q
    |||||||||| ||| ||||||||||| |||  || ||||||||||||||||||| |       |||||||||||||||| || ||||||||||||||||    
T  37971098 caacttctctctaaattttctttcttcttcattcatcgaggagtggttttaggtca-ttttttgacctagaatcacccctctacatcttttttcccctt 37971195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 550402 - 550327
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtcggag-ttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||||| || ||||||||| |||  ||| ||||||||||| || || ||||||||| ||||||||    
T  550402 agctcacacatttaaatgtgaagaagtggagtgttcgagattcgaaccccgacccctgcataaattatgcaatgtc 550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 12770469 - 12770394
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||||||||||  |||| || |||||||||||| || || ||||||||| ||||||||    
T  12770469 agctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 12770394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 41272195 - 41272120
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    ||||||||||||||||| |||||||||||  ||| | |||||||||||||  || || ||||||||| ||||||||    
T  41272195 agctcacacatttaaatgtggagaagtggtgtgtccagagttcgaaccccagcccctgcataaattatgcaatgtc 41272120  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 8183427 - 8183371
Alignment:
Q  7 gctgaagctcacacattt-aaatatggagaagtggattgtc-ggagttcgaaccccg 61  Q
    |||| ||||||||||||| |||||||||||||||| ||||| || ||||||||||||    
T  8183427 gctggagctcacacattttaaatatggagaagtgggttgtctggggttcgaaccccg 8183371  T

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Target: scaffold0246 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 24481 - 24409
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaat 83  Q
    ||||||||||||||||| || ||||||||| ||| ||| |||||||||||| || || ||||||||| |||||    
T  24481 agctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaat 24409  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23155994 - 23155919
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgt-cggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||||| |||| ||||||||| |  ||| ||||||||||||| || ||||| ||||||||| ||||||||    
T  23155994 agctcacacattaaaatgtggagaagttgggtgttcggagttcgaacctcggcctctgcataaattatgcaatgtc 23155919  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37553894 - 37553969
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||| ||||||  |||| |||||||||||| || ||||| ||||||||| ||||||||    
T  37553894 agctcacacaattaaatgtggataagtggggtgtctggagttcgaacctcggcctctgcataaattatgcaatgtc 37553969  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37684515 - 37684590
Alignment:
Q  12 agctcacacatttaaatatggagaagtggattgtc-ggagttcgaaccccgccctctacataaattaagcaatgtc 86  Q
    |||||||||| |||||| |||| ||||||  |||| |||||||||||| || ||||| ||||||||| ||||||||    
T  37684515 agctcacacaattaaatgtggataagtggggtgtctggagttcgaacctcgacctctgcataaattatgcaatgtc 37684590  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 24456294 - 24456206
Alignment:
Q  7 gctgaagctcacacatttaaatatggagaagtggattgtcggagttcgaaccccgccctctacataaattaagcaatgtcttaccaatt 95  Q
    |||| ||||||||||||||| | ||||||||||| |   ||| |||||||| ||| || || ||||||||| |||||||| | ||||||    
T  24456294 gctggagctcacacatttaactgtggagaagtgggtgtccggggttcgaactccgacccctgcataaattatgcaatgtcctgccaatt 24456206  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 23462 - 23401
Alignment:
Q  12 agctcacaca-tttaaatatggagaagtggattgtcggagttcgaaccccgccctctacata 72  Q
    |||||||||| ||||| |||||||||||||| |||| | |||||||||||| ||||| ||||    
T  23462 agctcacacaatttaattatggagaagtggagtgtccgggttcgaaccccggcctctgcata 23401  T

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