View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819_low_11 (Length: 351)

Name: NF6819_low_11
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819_low_11
NF6819_low_11
[»] chr4 (2 HSPs)
chr4 (1-349)||(1215998-1216338)
chr4 (185-227)||(6218247-6218289)
[»] chr1 (1 HSPs)
chr1 (185-228)||(25145484-25145527)
[»] chr6 (2 HSPs)
chr6 (187-260)||(13740688-13740764)
chr6 (187-260)||(13746188-13746264)
[»] chr8 (1 HSPs)
chr8 (184-260)||(15042668-15042747)
[»] chr7 (2 HSPs)
chr7 (184-224)||(31227958-31227998)
chr7 (197-260)||(42985134-42985200)
[»] chr5 (2 HSPs)
chr5 (184-224)||(9187332-9187372)
chr5 (185-260)||(32908717-32908795)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 1216338 - 1215998
Alignment:
Q  1 ggaattcctggtaattaaactgggctagataagccttatttgatgttactatactattcagcaatggtaatgtctataataagatgggtgctctttcggc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  1216338 ggaattcctg-taattaaactgggctagataagccttatttgatgttactatactattcagcaatggtaatgtctat-------tgggtgctctttcggc 1216247  T
Q  101 tctctacaaatgcgcaaattgttgaacgttatcttttgtgtttttaaagatttcaggagaaaactttcagatgtttttcgggattcttagaagtcgtggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1216246 tctctacaaatgcgcaaattgttgaacgttatcttttgtgtttttaaagatttcaggagaaaactttcagatgtttttcggaattcttagaagtcgtggt 1216147  T
Q  201 tgagtctaacacaacttcacaaaaccgattgaggtgatgattgactccacatataaacacccctaaggtgaggattgcctccaccgataaacacacgttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1216146 tgagtctaacacaacttcacaaaaccgattgaggtgatgattgactccacctataaacacccctaaggtgaggattgtctccaccgataaacacacgttt 1216047  T
Q  301 taacatatcaacctcacgaccaacattattgaacttggttcttggacat 349  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  1216046 taacatatcaacctcacgaccagcattattgagcttggttcttggacat 1215998  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 6218289 - 6218247
Alignment:
Q  185 tcttagaagtcgtggttgagtctaacacaacttcacaaaaccg 227  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  6218289 tcttagaaatcgtggttgtgtctaacacaactccacaaaaccg 6218247  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 25145484 - 25145527
Alignment:
Q  185 tcttagaagtcgtggttgagtctaacacaacttcacaaaaccga 228  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||    
T  25145484 tcttagaaatcgtggttgggtctaacacaacctcacaaaaccga 25145527  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 13740764 - 13740688
Alignment:
Q  187 ttagaagtcgtggttgagtctaacacaacttcacaaaaccga---ttgaggtgatgattgactccacatataaacac 260  Q
    |||||| ||||||||||| |||||||||| ||||||||||||    ||||| || ||||| |||||| |||||||||    
T  13740764 ttagaaatcgtggttgagcctaacacaacctcacaaaaccgacttatgaggcgaggattgtctccacttataaacac 13740688  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 13746264 - 13746188
Alignment:
Q  187 ttagaagtcgtggttgagtctaacacaacttcacaaaaccga---ttgaggtgatgattgactccacatataaacac 260  Q
    |||||| ||||||||||| |||||||||| ||||||||||||    ||||| || ||||| |||||| |||||||||    
T  13746264 ttagaaatcgtggttgagcctaacacaacctcacaaaaccgacttatgaggcgaggattgtctccacttataaacac 13746188  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 15042668 - 15042747
Alignment:
Q  184 ttcttagaagtcgtggttgagtctaacacaacttcacaaaaccgatt---gaggtgatgattgactccacatataaacac 260  Q
    ||||||||| ||||||||||| ||||||||||  ||||||| || ||   ||||||||||||| | |||| |||||||||    
T  15042668 ttcttagaaatcgtggttgagcctaacacaaccccacaaaatcggtttgcgaggtgatgattgcccccacttataaacac 15042747  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 31227998 - 31227958
Alignment:
Q  184 ttcttagaagtcgtggttgagtctaacacaacttcacaaaa 224  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  31227998 ttcttagaaatcgtggttgagtcttacacaactccacaaaa 31227958  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 42985134 - 42985200
Alignment:
Q  197 tggttgagtctaacacaacttcacaaaaccga---ttgaggtgatgattgactccacatataaacac 260  Q
    ||||||||||||||||||| |||||||| |||    |||||||| ||||| |||||| |||||||||    
T  42985134 tggttgagtctaacacaacctcacaaaatcgacttgtgaggtgaggattgcctccacttataaacac 42985200  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 9187372 - 9187332
Alignment:
Q  184 ttcttagaagtcgtggttgagtctaacacaacttcacaaaa 224  Q
    ||||||||| ||||||||||||||||||||||  |||||||    
T  9187372 ttcttagaaatcgtggttgagtctaacacaaccccacaaaa 9187332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 32908717 - 32908795
Alignment:
Q  185 tcttagaagtcgtggttgagtctaacacaacttcacaaaaccgatt---gaggtgatgattgactccacatataaacac 260  Q
    |||||||| ||||||||| |||||||| |||  | |||||||| ||   ||||||||||||| |||||| |||||||||    
T  32908717 tcttagaaatcgtggttgggtctaacataacccctcaaaaccggtttgtgaggtgatgattgcctccacttataaacac 32908795  T

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