View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_15 (Length: 292)
Name: NF6819_low_15
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 26930206 - 26930477
Alignment:
| Q |
1 |
ttccatgtcattttaatattcacaaatcatcaaaataacaagaaatgaatgtttcaaacatattcactgtacagttgtagcagccagagatgccccaaca |
100 |
Q |
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| T |
26930206 |
ttccatatcattttaacattcaccaatcatcaaaataacaagatatgaatgtgccaaacatattctctgtacaattgtagcagccagagatgccccaaca |
26930305 |
T |
|
| Q |
101 |
taattttatggtaaacccattgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatgatatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26930306 |
taattttatggtaaacccattgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatgatatttta |
26930405 |
T |
|
| Q |
201 |
acaaaagttactgcttacagcgacaaaattgatgttatgtcaaaaatcatccttgttatatttccaaggtca |
272 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26930406 |
acaaaagttactgcttacagcggcaaaattgatgttatgtcaaaaatcatccttgttatatttccaaggtca |
26930477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 276
Target Start/End: Original strand, 26963226 - 26963408
Alignment:
| Q |
96 |
caacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatgat |
194 |
Q |
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| T |
26963226 |
caacataattttatgataaaccccatttttatactcgaaatattttcaaaacattcaatgtggccttcaaaagattgttatataaattcggtccaatgat |
26963325 |
T |
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| Q |
195 |
attttaacaaaagttactgcttacagcgacaaaattgatgttatgtcaaaaatcatccttgtt-atatttccaaggtcaaatt |
276 |
Q |
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| T |
26963326 |
attttaacaaaagttactgcgtatagcggcaaaattgatgtcatgtcaaaaatcatcctagttaatatttccaatgtcaaatt |
26963408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 26940843 - 26940646
Alignment:
| Q |
79 |
agcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatat |
177 |
Q |
| |
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|||||||| ||||||| ||||||||||||||| ||||||| ||| | |||||||||| ||| |||||| |||||||| |||||||||||||| || ||| |
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| T |
26940843 |
agcagccaaagatgccgcaacataattttatgataaaccccatttttatactcgaaatattctcaaaa--ttcaatgtggccctcaaaagatttttgtat |
26940746 |
T |
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| Q |
178 |
aaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgtcaaaaatcatccttgtt-atatttccaaggtcaaatt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||| | || | |||||||||||| ||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
26940745 |
aaatttggtccaatgatattttaacaaaagttactgcgcatagaggcaaaattgatgtcatgtcaaaaatcatcatagttaatatttccaaggtcaaatt |
26940646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26963155 - 26963203
Alignment:
| Q |
2 |
tccatgtcattttaatattcacaaatcatcaaaataacaagaaatgaat |
50 |
Q |
| |
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|
| T |
26963155 |
tccatatcattttaacattcaccagtcatcaaaataacatgaaatgaat |
26963203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 276
Target Start/End: Original strand, 36673165 - 36673380
Alignment:
| Q |
68 |
tgtacagttgtagcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaa |
166 |
Q |
| |
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|||||| || ||| ||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||| | |||||||||| |
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| T |
36673165 |
tgtacaattatagaagccagagatgccccaacataattttatggtaaaccccattttgatatttgaaagattttcaaaaccttcaatctggccctcaaaa |
36673264 |
T |
|
| Q |
167 |
gattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgt------caaaaatcatccttgtt-at |
259 |
Q |
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|||| | |||||||||||||| |||||||||||||||| || ||||||||| | | |||||||||| |||| ||||||| ||||||||| || |
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| T |
36673265 |
gattatgatataaatttggtcggatgatattttaacaaatgtatctgcttacacaggccaaattgatgtcatgtactgaccaaaaat-atccttgttaat |
36673363 |
T |
|
| Q |
260 |
atttccaaggtcaaatt |
276 |
Q |
| |
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||||||||||||||||| |
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| T |
36673364 |
atttccaaggtcaaatt |
36673380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 27564556 - 27564679
Alignment:
| Q |
94 |
cccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatg |
192 |
Q |
| |
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|||||| |||||||||| ||||||| ||| |||||||| ||||||||||| || ||||||| | |||||||| |||| |||||||||||| ||||| || |
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| T |
27564556 |
cccaacgtaattttatgataaaccccattttgatactc-aaagattttcataaaattcaatatggccctcaa--gattattatataaatttcgtccactg |
27564652 |
T |
|
| Q |
193 |
atattttaac-aaaagttactgcttac |
218 |
Q |
| |
|
|||||||||| |||| ||||||||||| |
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| T |
27564653 |
atattttaacaaaaaattactgcttac |
27564679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 29413749 - 29413947
Alignment:
| Q |
25 |
aatcatcaaaataacaagaaatgaat---gtttcaaacatattcactgtacagttgtagcagccagagatgccccaacataattttatggtaaaccc-at |
120 |
Q |
| |
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||||||| ||||||||||||||||| || |||| || ||| ||||||| || ||||||| |||||||||| | |||| |||||||||||||| || |
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| T |
29413749 |
aatcatcgaaataacaagaaatgaacaacgtgccaaagatgttctctgtacaattatagcagc-agagatgccctactataactttatggtaaaccccat |
29413847 |
T |
|
| Q |
121 |
tgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatgatattttaacaaaagttactgcttacag |
220 |
Q |
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| T |
29413848 |
ttagatactcgaaagattttcaaaacattcaatttgtccctcaaaagattattaaatagagttggtccaatgatattttaacaaaaattactgcatacag |
29413947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 24202236 - 24202133
Alignment:
| Q |
68 |
tgtacagttgtagcagccagagatgccccaacataattttatggtaaa-cccattgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaa |
166 |
Q |
| |
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|||||| || |||||||||||||||||||||||| |||||| |||||| |||||| ||||||| ||||||||||||||||||| || | ||||||||| |
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| T |
24202236 |
tgtacaattctagcagccagagatgccccaacatgattttaaggtaaaccccattttgatactagaaagattttcaaaacattttatttgtccctcaaaa |
24202137 |
T |
|
| Q |
167 |
gatt |
170 |
Q |
| |
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|||| |
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|
| T |
24202136 |
gatt |
24202133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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