View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_17 (Length: 281)
Name: NF6819_low_17
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 52048174 - 52048443
Alignment:
| Q |
2 |
tgagaagtagcctttatcatcggtaattgtccaaaattgatagccctgttacgaaataataaaaaggtatcagatatcatgtatccctatactagtagta |
101 |
Q |
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| T |
52048174 |
tgagaaatagcctttatcatcggtaatggtccaaaattgatagccctgttacgaaataataaaaaggtatcagatatcatgtgtccctatactagtagta |
52048273 |
T |
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| Q |
102 |
gtatttattcaaatggtacaagaaggaaatgattaatttaaaaggttaccttgtattctctttgccaagatccaacatctcctggggctgctaatcccac |
201 |
Q |
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| T |
52048274 |
gtatttattcaaatggtacaagaaggaaatggttaattaaaaaggttaccttgtattctctttgccaagatccaacatctcctggggctgctaatcccac |
52048373 |
T |
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| Q |
202 |
ataagcaccactgactgggacgaatgcatccctgatgtacctatacaagtttagtagtgaaccgtgatgt |
271 |
Q |
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| T |
52048374 |
ataagcaccactgactgggacgaatgcatccctgatgtacctatacaagtttagtagtgaaccgtgatgt |
52048443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 28208994 - 28209055
Alignment:
| Q |
149 |
accttgtattctctttgccaagatccaacatctcctggggctgctaatcccacataagcacc |
210 |
Q |
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| T |
28208994 |
accttgcattccctttgccaagatccagcatctcctggtggggctaatcctacatatgcacc |
28209055 |
T |
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