View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_18 (Length: 273)
Name: NF6819_low_18
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 266
Target Start/End: Complemental strand, 12043822 - 12043617
Alignment:
| Q |
63 |
taattcaataagtcattcaagacat--tctgatcagctgcaactccattatctccttcattctgagttcctccttccaaatcttcacatttaattattgg |
160 |
Q |
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| T |
12043822 |
taattcaataagtcattcaagacatattctgatcagctgcaactccattatctccttcattctaagttcctccttccaaatcttcacatttaattattgg |
12043723 |
T |
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| Q |
161 |
ataagtaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga |
260 |
Q |
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| T |
12043722 |
ataagcaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga |
12043623 |
T |
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| Q |
261 |
tgtcca |
266 |
Q |
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|||||| |
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| T |
12043622 |
tgtcca |
12043617 |
T |
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Back To:
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 26331899 - 26331943
Alignment:
| Q |
103 |
ctccattatctccttcattctgagttcctccttccaaatcttcac |
147 |
Q |
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| T |
26331899 |
ctccattatctccttcattttgggttcctccttccaaatcttcac |
26331943 |
T |
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