View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819_low_22 (Length: 235)

Name: NF6819_low_22
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819_low_22
NF6819_low_22
[»] chr3 (4 HSPs)
chr3 (1-223)||(24638488-24638710)
chr3 (1-223)||(24647417-24647639)
chr3 (15-222)||(48099603-48099810)
chr3 (15-218)||(20620340-20620531)
[»] chr1 (7 HSPs)
chr1 (15-222)||(44387237-44387444)
chr1 (15-222)||(9932321-9932528)
chr1 (49-221)||(24209903-24210075)
chr1 (49-221)||(45029680-45029852)
chr1 (49-221)||(45034531-45034703)
chr1 (16-159)||(7324509-7324652)
chr1 (46-152)||(30332255-30332361)
[»] chr8 (3 HSPs)
chr8 (3-222)||(23583874-23584093)
chr8 (46-152)||(32307300-32307406)
chr8 (16-152)||(40270647-40270783)
[»] scaffold0134 (1 HSPs)
scaffold0134 (25-215)||(40683-40873)
[»] chr2 (1 HSPs)
chr2 (25-150)||(1586475-1586600)
[»] chr6 (2 HSPs)
chr6 (49-221)||(33165919-33166091)
chr6 (25-218)||(16594532-16594725)
[»] scaffold0655 (1 HSPs)
scaffold0655 (16-117)||(5960-6061)
[»] scaffold0009 (1 HSPs)
scaffold0009 (178-218)||(31918-31958)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24638710 - 24638488
Alignment:
Q  1 cattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638710 cattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggat 24638611  T
Q  101 acagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638610 acagaggtgttgctaatatggtttctgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtga 24638511  T
Q  201 taatgttaatgccatctaccttg 223  Q
    |||||||||||||||||||||||    
T  24638510 taatgttaatgccatctaccttg 24638488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24647639 - 24647417
Alignment:
Q  1 cattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggat 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  24647639 cattctacttccgtctattgtgtgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacactttctcaatccagtgcagaagccggat 24647540  T
Q  101 acagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647539 acagaggtgttgctaatatggtttctgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtga 24647440  T
Q  201 taatgttaatgccatctaccttg 223  Q
    |||||||||||||||||||||||    
T  24647439 taatgttaatgccatctaccttg 24647417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 48099810 - 48099603
Alignment:
Q  15 ctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgct 114  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||| ||||||||||| ||||| | ||| ||||||||||| |  ||||| |||||||||    
T  48099810 ctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgcgctctagtgcagaagctgagtacaggggtgttgct 48099711  T
Q  115 aatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgcca 214  Q
    ||| |||| | |||||||||||||||||| || ||||||||||| ||||  | |||||| || || |||||||||||||||||||||||||||| |||||    
T  48099710 aatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctcaagctactttggtgtattgtgataatgttagtgcca 48099611  T
Q  215 tctacctt 222  Q
    | ||||||    
T  48099610 tttacctt 48099603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 20620340 - 20620531
Alignment:
Q  15 ctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgct 114  Q
    ||||||| ||||||||||||||||||| |  ||||| |||| ||||||||||||||||||||||  ||||| |||||||||   |||||               
T  20620340 ctattgtgtgtttcttggtgacaacctcatttcatgatctttcaaacgacaacccacgctttcttgctccaatgcagaagctaaataca----------- 20620428  T
Q  115 aatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgcca 214  Q
     || |||||| ||| || ||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||| ||| || |||||||||| | |||    
T  20620429 -atgtggtttctgagtcgtgttggcttcgcaatcttctcttagagtttcactacccactttcccaggctcctttggagtactgcgataatgttacttcca 20620527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 44387237 - 44387444
Alignment:
Q  15 ctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgct 114  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||||||||||||||| ||||||  ||| |||||||||||    || |  |||||||||    
T  44387237 ctattgtgtgtttcttggtgacaacctcatttcttggtcttccaaacgacaacccacactttcttgctcaagtgcagaagctaagtatatgggtgttgct 44387336  T
Q  115 aatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgcca 214  Q
    ||| |||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  44387337 aatgtggtttctgaatcatgttggcttcgcaatcttctcttagagcttcactacccactttcccagactagtttggtgtattgtgataatgttagtgcca 44387436  T
Q  215 tctacctt 222  Q
    ||||||||    
T  44387437 tctacctt 44387444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 9932528 - 9932321
Alignment:
Q  15 ctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgct 114  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||| ||||||||||| ||||| | ||| ||||||||||| |  ||||| |||||||||    
T  9932528 ctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgcgctctagtgcagaagctgagtacaggggtgttgct 9932429  T
Q  115 aatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgcca 214  Q
    ||| |||| | |||||||||||||||||| || ||||||||||| ||||  | |||||| || || |||||||||||||||||||||||||||| |||||    
T  9932428 aatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctcaagctactttggtgtattgtgataatgttagtgcca 9932329  T
Q  215 tctacctt 222  Q
    | ||||||    
T  9932328 tttacctt 9932321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 24209903 - 24210075
Alignment:
Q  49 tggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatc 148  Q
    ||||| |||||  |||||||||| || ||||  || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||    
T  24209903 tggtcctccaagagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatc 24210002  T
Q  149 ttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctacct 221  Q
    |  |  ||||||| | ||  ||  || | ||||||||||||||||||||||| ||||||| ||||||||||||    
T  24210003 tcttactggagctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacct 24210075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 45029680 - 45029852
Alignment:
Q  49 tggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatc 148  Q
    ||||| |||||  |||||||||| || ||||  || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||    
T  45029680 tggtcctccaagagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatc 45029779  T
Q  149 ttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctacct 221  Q
    |  |  ||||||| | ||  ||  || | ||||||||||||||||||||||| ||||||| ||||||||||||    
T  45029780 tcttactggagctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacct 45029852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 45034531 - 45034703
Alignment:
Q  49 tggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatc 148  Q
    ||||| |||||  |||||||||| || ||||  || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||    
T  45034531 tggtcctccaagagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatc 45034630  T
Q  149 ttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctacct 221  Q
    |  |  ||||||| | ||  ||  || | ||||||||||||||||||||||| ||||||| ||||||||||||    
T  45034631 tcttactggagctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacct 45034703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 7324652 - 7324509
Alignment:
Q  16 tattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgcta 115  Q
    |||||| | |||||||||||||| ||    ||||||||||||||||| ||||||||  | |||| ||| ||||| ||||||| |||| |||||||||| |    
T  7324652 tattgtgtatttcttggtgacaatctactctcatggtcttccaaacgccaacccacattatctcgctctagtgctgaagccgaataccgaggtgttgcca 7324553  T
Q  116 atatggtttttgaatcttgttggcttcgcaatcttctcttggag 159  Q
    || | || | ||| ||||||||| | ||||| || || ||||||    
T  7324552 atgtcgtatctgagtcttgttggttacgcaacctacttttggag 7324509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 30332255 - 30332361
Alignment:
Q  46 tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca 145  Q
    ||||||||| | ||||||||||| || |||||||  || ||||||||||| |  ||  | |||||||||||| | ||||  ||||||||||||||||| |    
T  30332255 tcatggtctgctaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttcagaatcttgttggcttcgaa 30332354  T
Q  146 atcttct 152  Q
    |||||||    
T  30332355 atcttct 30332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 23583874 - 23584093
Alignment:
Q  3 ttctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatac 102  Q
    ||||||||| | ||||||| | ||||||||||| ||||| |  || |||||||||||  |||||||||| |||||||  || |||||| |||| |  |||    
T  23583874 ttctacttctggctattgtgtatttcttggtgataacctcatttcctggtcttccaagagacaacccacactttctcggtctagtgcaaaagctgagtac 23583973  T
Q  103 agaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgata 202  Q
    || |||||||||||| |||| | ||||||||||||| ||||||| ||||||||||||||||  | |||||| || |||||||| ||||||||||||||||    
T  23583974 aggggtgttgctaatgtggtatctgaatcttgttggtttcgcaaccttctcttggagcttcatttcccactctctcaggctaccttggtgtattgtgata 23584073  T
Q  203 atgttaatgccatctacctt 222  Q
    |||||| |||||||||||||    
T  23584074 atgttagtgccatctacctt 23584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 32307406 - 32307300
Alignment:
Q  46 tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca 145  Q
    ||||||||| ||||||||||||| || |||||||  || ||||||||||| |  ||  | |||||||||||| | |||| |||||||||||||||||| |    
T  32307406 tcatggtctgccaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttctgaatcttgttggcttcgaa 32307307  T
Q  146 atcttct 152  Q
    | |||||    
T  32307306 accttct 32307300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 40270783 - 40270647
Alignment:
Q  16 tattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgcta 115  Q
    |||||| | ||||| |||||||||||||  || |||||||||||||| || || || || || |  || ||||| ||||| | ||| ||||||||||| |    
T  40270783 tattgtgtttttctaggtgacaaccttatttcttggtcttccaaacggcagccaactctctcccgttctagtgctgaagctgaatatagaggtgttgcaa 40270684  T
Q  116 atatggtttttgaatcttgttggcttcgcaatcttct 152  Q
    || | || | |||||| |||||| |||||||||||||    
T  40270683 atgttgtctctgaatcgtgttggattcgcaatcttct 40270647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 40683 - 40873
Alignment:
Q  25 tttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggttt 124  Q
    |||||||||||||||||||  || |||||||||||| | || ||||| || |||||||||||||| ||||||| ||| ||||||||||||||| | || |    
T  40683 tttcttggtgacaaccttatctcttggtcttccaaaaggcagcccactctctctcactccagtgctgaagccgaatatagaggtgttgctaatgttgtat 40782  T
Q  125 ttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccat 215  Q
     ||| || |||||| |||| || ||| | ||||||||||  |  ||  || | ||||| ||||||||||||||||| ||||||| ||||||    
T  40783 ctgagtcatgttggattcgtaaccttttattggagcttcattttcctattcctcaggccactttggtgtattgtgacaatgttagtgccat 40873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 1586600 - 1586475
Alignment:
Q  25 tttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggttt 124  Q
    |||||||||||||||||||  || |||||||||||| | ||||| || || ||||| || ||||| ||||| | ||| ||||||||||||||| | || |    
T  1586600 tttcttggtgacaaccttatctcttggtcttccaaaaggcaacctactctctctcagtctagtgctgaagctgaatatagaggtgttgctaatgttgtat 1586501  T
Q  125 ttgaatcttgttggcttcgcaatctt 150  Q
     ||| ||||||||| |||| ||||||    
T  1586500 atgagtcttgttggattcgtaatctt 1586475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 33165919 - 33166091
Alignment:
Q  49 tggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatc 148  Q
    ||||| |||||  |||||||||| || ||||  || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||    
T  33165919 tggtcctccaagagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatc 33166018  T
Q  149 ttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctacct 221  Q
    |  |   |||||| | ||  ||  || | ||||||||||||||||||||||| ||||||| ||||||||||||    
T  33166019 tcttacaggagctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacct 33166091  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 16594532 - 16594725
Alignment:
Q  25 tttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggttt 124  Q
    ||||| |||||||||||||  || |||||||||||| | ||||| || || || |  || ||||| ||||||| ||| || || ||||| ||| | ||||    
T  16594532 tttctaggtgacaaccttatttcttggtcttccaaaaggcaacctactctctcccgttctagtgctgaagccgaatataggggagttgcaaatgttgttt 16594631  T
Q  125 ttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatcta 218  Q
      ||||| |||||| |||||||||||||| | || || |  |  ||  || |  |||| ||||||||||||||||| ||||||| |||||||||    
T  16594632 ccgaatcgtgttggattcgcaatcttctcctagaactccattttcctattcctgaggccactttggtgtattgtgacaatgttagtgccatcta 16594725  T

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Target: scaffold0655 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 6061 - 5960
Alignment:
Q  16 tattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgcta 115  Q
    |||||| | |||||||||||||||||||  || |||||||||||| | || ||||| || ||||  || ||||  ||||||| ||| |||||||||||||    
T  6061 tattgtgtttttcttggtgacaaccttatctcttggtcttccaaaaggcagcccactctctctcggtctagtgttgaagccgaatatagaggtgttgcta 5962  T
Q  116 at 117  Q
    ||    
T  5961 at 5960  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 31918 - 31958
Alignment:
Q  178 caggctactttggtgtattgtgataatgttaatgccatcta 218  Q
    ||||| ||||||||||||||||| ||||||| |||||||||    
T  31918 caggcaactttggtgtattgtgacaatgttagtgccatcta 31958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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