View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_23 (Length: 229)
Name: NF6819_low_23
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24639006 - 24639225
Alignment:
| Q |
1 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639006 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtc |
24639105 |
T |
|
| Q |
101 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtgtcatgatggatttctgaagatcgtgagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24639106 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtttcatgatggatttctgaagatcgtgagag |
24639205 |
T |
|
| Q |
201 |
gaggtgatgaggatgatgtc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
24639206 |
gaggtgatgaggatgatgtc |
24639225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48100120 - 48100340
Alignment:
| Q |
1 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtc |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| || ||||| || ||| | |||| ||||| ||||| || || | | | | |||||| |
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| T |
48100120 |
tcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgatttcaccaacatagatactctgactaaggaaaatcccaccaacatgtc |
48100219 |
T |
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| Q |
101 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcgtgaga |
199 |
Q |
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| T |
48100220 |
tagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctcatggga |
48100319 |
T |
|
| Q |
200 |
ggaggtgatgaggatgatgtc |
220 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48100320 |
ggaggtgatgaggatgatgtc |
48100340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 21877413 - 21877629
Alignment:
| Q |
2 |
caactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtct |
101 |
Q |
| |
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||||||||||||||||||||||||| |||||||| || |||||||||||| | |||||||||||||||| ||||| | || | | | | ||||||||| |
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| T |
21877413 |
caactggagtagcagaaggtttgcacaaggccatgtctactcgagcaataaagtcactagcataaatactctgactagggaaaatcctaccagcatgtct |
21877512 |
T |
|
| Q |
102 |
ggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcgtgagag |
200 |
Q |
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|||||| | | |||||| ||||||||||| |||||| |||||||||||| |||||||| |||| |||| |||||||||||| |||||||| || ||| |
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| T |
21877513 |
ggtcacgaaagtgcccaggaagtaactcaatggacccaaatccttcatagtaaactcagaggcaagtagtgccatgatggatttatgaagatcatgggag |
21877612 |
T |
|
| Q |
201 |
gaggtgatgaggatgat |
217 |
Q |
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||||||||||||||||| |
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| T |
21877613 |
gaggtgatgaggatgat |
21877629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44386927 - 44386707
Alignment:
| Q |
1 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| || ||||| |||| | | ||||| |
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| T |
44386927 |
tcaactggagtagcagaaggtttgcacgaggccatgcctgctcgagcaataatatcactagcataggtactctggctgaggaagagtccaccatcatgtt |
44386828 |
T |
|
| Q |
101 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcgtgaga |
199 |
Q |
| |
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| ||||| ||||||||| || |||||||||||||| ||||||| || || |||||||| ||||||||||||||||||||||| ||||||| || || |
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| T |
44386827 |
tagtcacggaaatgcccaaaaaataactcagtggacccaaatccttaatggcaaactcagatgcaaggagtgtcatgatggatttccgaagatcatggga |
44386728 |
T |
|
| Q |
200 |
ggaggtgatgaggatgatgtc |
220 |
Q |
| |
|
||| ||||||||||||||||| |
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| T |
44386727 |
ggatgtgatgaggatgatgtc |
44386707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9932838 - 9933058
Alignment:
| Q |
1 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||||| || ||| |||||| ||||| ||||| || || | | | | |||||| |
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| T |
9932838 |
tcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgatttcaccagcatagatactctgactaaggaaaatcccaccaacatgtc |
9932937 |
T |
|
| Q |
101 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcgtgaga |
199 |
Q |
| |
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| ||||| |||||||||| || |||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||| |||| || || || |
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| T |
9932938 |
tagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctcatggga |
9933037 |
T |
|
| Q |
200 |
ggaggtgatgaggatgatgtc |
220 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9933038 |
ggaggtgatgaggatgatgtc |
9933058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23583600 - 23583548
Alignment:
| Q |
1 |
tcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
53 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
23583600 |
tcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataat |
23583548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 23583500 - 23583380
Alignment:
| Q |
101 |
tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaac-aaggagtgtcatgatggatttctgaagatcgtgaga |
199 |
Q |
| |
|
||||||| ||||||| || || |||| || |||||| ||||||||||||| |||||||| |||||||| |||||| ||||| |||||| || || |
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| T |
23583500 |
tggtcacggcaatgccaaaaaaataacacaatggacccaaatccttcatagcaaactcagaggtaaggagtgccatgatagattttcgaagataatggga |
23583401 |
T |
|
| Q |
200 |
ggaggtgatgaggatgatgtc |
220 |
Q |
| |
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||||||||| ||||||||||| |
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|
| T |
23583400 |
ggaggtgataaggatgatgtc |
23583380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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