View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_3 (Length: 438)
Name: NF6819_low_3
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 43831529 - 43831125
Alignment:
| Q |
19 |
aacaaccacatatctccatgatgcacaaatcagttaaacccatgaataaagattttaaatcctctcttttaatttactaataagagagaaaaatcgtgtt |
118 |
Q |
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| T |
43831529 |
aacaaccacatatctccatgatgcacaaatcagttaaacccatgaataaagattttaaatcctctcttttaatttactaataagagagaaaaatcgtgtt |
43831430 |
T |
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| Q |
119 |
acgagagagataatcacattgannnnnnnactaaattggtcactnnnnnnntccattcttctcataacaggactttctcctatattagtgattagcaaag |
218 |
Q |
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| T |
43831429 |
acgagagagataatcacattgatttttttactaaattggtcactaaaaaaatccattcttctcataacaggactttctcctatattagtgattagcaaag |
43831330 |
T |
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| Q |
219 |
aaaactacttataataaagttaccaataggaaaaccaagtgctcctgcctttactgaatatagcgccatattccttgctcggaaacggatcgatcctggc |
318 |
Q |
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| T |
43831329 |
aaaactacttataataaagttaccaataggaaaaccaagtgctcctgcctttactgaatatagcgccatattccttgctcgggaacggatcgatcctggc |
43831230 |
T |
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| Q |
319 |
tctaacataaatggaaaagaatacattcacaaataaattttatgagatgtaaccatttctccgtttatatttaaacctaaagaatcatttcacattaagt |
418 |
Q |
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| T |
43831229 |
tctaacataaatggaaaagaatacattcacaaataaattttatgagatgtaaccatttctctgtttatatttaaacctaaagaatcatttcacattaagt |
43831130 |
T |
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| Q |
419 |
atgat |
423 |
Q |
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| T |
43831129 |
atgat |
43831125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 412
Target Start/End: Complemental strand, 43826095 - 43825863
Alignment:
| Q |
177 |
ttctcataacaggactttctcctatattagtgattagcaaagaaaactactt-ataataaagttaccaataggaaaaccaagtgctcctgcctttactga |
275 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| || |||| | || || |||| | |||||||| || |||| || || |||||| |
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| T |
43826095 |
ttctcataacaggactttctcctat--tagtgattagcaaagacaaatactcgagaaataa--tacccagaggaaaacaaaatgctgctcccagtactga |
43826000 |
T |
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| Q |
276 |
atatagcgccatattccttgctcggaaacggatcgatcctggctctaacataaatggaaaagaatacattcacaaataaattttatgagatgtaaccatt |
375 |
Q |
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||| ||||||||||||||||| |||||| |||||||||| |||||||||| |||||| |||||||| ||||| |||||||||| |||||| |||| |
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| T |
43825999 |
tcctagtgccatattccttgctcgccaacggaacgatcctggcactaacataaagggaaaacaatacattaacaaagtaattttatgacatgtaaacatt |
43825900 |
T |
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| Q |
376 |
tctccgtttatatttaaacctaaagaatcatttcaca |
412 |
Q |
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| ||| ||||||||| | ||||||||| | ||||||| |
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| T |
43825899 |
tttccctttatatttcagcctaaagaaacctttcaca |
43825863 |
T |
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