View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819_low_5 (Length: 414)
Name: NF6819_low_5
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 32912944 - 32912537
Alignment:
| Q |
1 |
ccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912944 |
ccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcac |
32912845 |
T |
|
| Q |
101 |
gagatccacaggacgaattttgaaattaggtgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912844 |
gagatccacaggacgaattttgaaattaggtgtctttggatcaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaata |
32912745 |
T |
|
| Q |
201 |
gcatcaaatttataaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912744 |
gcatcaaatttataaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccc |
32912645 |
T |
|
| Q |
301 |
tccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagtta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
32912644 |
tccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaaatta |
32912545 |
T |
|
| Q |
401 |
gccccaga |
408 |
Q |
| |
|
|||||||| |
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|
| T |
32912544 |
gccccaga |
32912537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 34 - 388
Target Start/End: Complemental strand, 32924892 - 32924530
Alignment:
| Q |
34 |
caagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaatta---gg |
130 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| || | |||||||||||||||| | ||| | || || |
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|
| T |
32924892 |
caagaagtggataagttgatttggcctcctcaagatttaatgtacaagctttcttagcttcagtctcaagatccacaggacgaagtgtgagactataagg |
32924793 |
T |
|
| Q |
131 |
tgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaat-----taaatagcatcaaatttata---aaagaaa- |
221 |
Q |
| |
|
||| ||||| | ||||| ||||| |||||||||||| ||||||||||||| |||||||||| | || | |||||| | || ||| ||| |
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|
| T |
32924792 |
tgtatttgggtcaaccaaaccaatctaaaataataa----acaatgtaattagaaaggcttaatgttaatgaacactatcaaaataattgggaaataaat |
32924697 |
T |
|
| Q |
222 |
--acaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattcca |
319 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| |||| ||||| ||| ||||||||||| |
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|
| T |
32924696 |
taacaataataa--tacatacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattcca |
32924599 |
T |
|
| Q |
320 |
ccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
388 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |
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|
| T |
32924598 |
ccaaaagtgcaattctgatagggacatggataattcaatttaagagcctcacgaactatctttttgcat |
32924530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 399
Target Start/End: Complemental strand, 32935684 - 32935523
Alignment:
| Q |
238 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
337 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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|
| T |
32935684 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
32935585 |
T |
|
| Q |
338 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagtt |
399 |
Q |
| |
|
||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |||||||||| |
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|
| T |
32935584 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagtt |
32935523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 32935889 - 32935764
Alignment:
| Q |
41 |
tggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtctttgga |
140 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| ||| | ||| ||| | || |||||||| | ||||| |
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|
| T |
32935889 |
tggataagtggatttgacatcctcaaagtttaatgcacaagctcgtttagcttcaatttcgaaatctattggatgaagtatggaattaggtttatttggc |
32935790 |
T |
|
| Q |
141 |
ttaaccataccaacctaaaataataa |
166 |
Q |
| |
|
| |||||||||||||||||| ||||| |
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|
| T |
32935789 |
tcaaccataccaacctaaaaaaataa |
32935764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 32927366 - 32927261
Alignment:
| Q |
294 |
ttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccatt |
393 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||| ||||||| ||| |
|
|
| T |
32927366 |
ttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatc |
32927267 |
T |
|
| Q |
394 |
aaagtt |
399 |
Q |
| |
|
|||||| |
|
|
| T |
32927266 |
aaagtt |
32927261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 399
Target Start/End: Complemental strand, 32950302 - 32950186
Alignment:
| Q |
283 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
382 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || ||| ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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|
| T |
32950302 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctct |
32950203 |
T |
|
| Q |
383 |
ttgcatccattaaagtt |
399 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
32950202 |
ttgcattcatcaaagtt |
32950186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 399
Target Start/End: Complemental strand, 32943121 - 32943005
Alignment:
| Q |
283 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
382 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || || ||| |||||||||| |||| ||||||||||||| ||||||||| | |
|
|
| T |
32943121 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct |
32943022 |
T |
|
| Q |
383 |
ttgcatccattaaagtt |
399 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
32943021 |
ttgcattcatcaaagtt |
32943005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 32927706 - 32927656
Alignment:
| Q |
45 |
taagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttca |
95 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
32927706 |
taagtgtatttgacatcctcaaagtttaatgtacaagctcgcttagcttca |
32927656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 11825246 - 11824871
Alignment:
| Q |
1 |
ccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
11825246 |
ccatgcatacatatgaagctatatttttcttagcaagaaatggataactggatttggcatcctcaaaatttaatgcacaagctttcttagcttcactctc |
11825147 |
T |
|
| Q |
101 |
gagatccacaggacgaattttgaaattaggtgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaata |
200 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
11825146 |
gaaatccacaggtcgaattttgaaattaggtttatttggatcaaccataccaacctaaaataataa----acaatgtaattagaaaggcttaat------ |
11825057 |
T |
|
| Q |
201 |
gcatcaaattta-taaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttcccc |
299 |
Q |
| |
|
|| ||||| | ||||| |||||||| | | ||||||| ||| ||| ||||||||||||| |||||| ||||||||| | | |||||||| |||| | |
|
|
| T |
11825056 |
-gataaaattaattaaaatgaaacaatatt--aatacatacttctgcagctaggtaaaagaaaaatgaagcagcaaaaagttttctctgtccacttcctc |
11824960 |
T |
|
| Q |
300 |
ctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
388 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
11824959 |
ctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcat |
11824871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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