View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819_low_7 (Length: 391)
Name: NF6819_low_7
Description: NF6819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 37996461 - 37996099
Alignment:
| Q |
16 |
gacatcacggtatgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttaga |
115 |
Q |
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| T |
37996461 |
gacatcacggtatgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttaga |
37996362 |
T |
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| Q |
116 |
gaaggtggaaagaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaaga |
215 |
Q |
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| T |
37996361 |
gaaggtggaaagaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaaga |
37996262 |
T |
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| Q |
216 |
aaacccctacttcaacatcagatacaagtacagcccctcttttatggccacttaaggatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgt |
315 |
Q |
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| T |
37996261 |
aaacccctacttcaacatcagatacaagtacagcccctcttttatggccacttaacgatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgt |
37996162 |
T |
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| Q |
316 |
tcaaccaatggctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgt |
378 |
Q |
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| T |
37996161 |
tcaaccaatggctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgt |
37996099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 35698764 - 35698881
Alignment:
| Q |
32 |
aatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttagagaaggtggaaagaaag |
131 |
Q |
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| T |
35698764 |
aatctatgtcgggaagccatcagatatgctgaagatggggcggtaactatggaaacttataatgctgctatgactggttttaaagaaggtgaaaagaagg |
35698863 |
T |
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| Q |
132 |
ttgatgtcatgaagagaa |
149 |
Q |
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| T |
35698864 |
ttgctgtgatgaaaagaa |
35698881 |
T |
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