View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6820_high_12 (Length: 321)

Name: NF6820_high_12
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6820_high_12
NF6820_high_12
[»] chr6 (1 HSPs)
chr6 (8-303)||(34899313-34899608)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 34899313 - 34899608
Alignment:
Q  8 gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899313 gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat 34899412  T
Q  108 cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcaaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899413 cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcgaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg 34899512  T
Q  208 acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatac 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899513 acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatac 34899608  T

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