View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6820_high_17 (Length: 243)
Name: NF6820_high_17
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 11869089 - 11868878
Alignment:
| Q |
23 |
actcataatgtcaccttgttaatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaa |
122 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11869089 |
actcataataccaccttgttaattttgtttctaggtatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaatcaattggcttctaa |
11868990 |
T |
|
| Q |
123 |
agggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11868989 |
agggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacatctttctctgcctggtcttgttgtttttcat |
11868890 |
T |
|
| Q |
223 |
caacttgatgtc |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11868889 |
caacttgatgtc |
11868878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 11879143 - 11878951
Alignment:
| Q |
42 |
taatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11879143 |
taatcttgtttctagatatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
11879044 |
T |
|
| Q |
142 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11879043 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtc |
11878951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 11894150 - 11893958
Alignment:
| Q |
42 |
taatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894150 |
taatcttgtttctagatatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
11894051 |
T |
|
| Q |
142 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894050 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtc |
11893958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 11896559 - 11896367
Alignment:
| Q |
42 |
taatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896559 |
taatcttgtttctagatatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgctt |
11896460 |
T |
|
| Q |
142 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896459 |
actgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtc |
11896367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 11875541 - 11875342
Alignment:
| Q |
35 |
accttgttaatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11875541 |
accttgttaatcttgtttctagatatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaatcaattggcttctaaagggatcactgt |
11875442 |
T |
|
| Q |
135 |
ggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
11875441 |
ggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgttttccaacaacttgatgtc |
11875342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 11890548 - 11890476
Alignment:
| Q |
35 |
accttgttaatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11890548 |
accttgttaatcttgtttctagatatgcagttgttacaggagcaaacaaaggaataggatttgcagtatgcaa |
11890476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 11945877 - 11945772
Alignment:
| Q |
14 |
atcataataactcataatgtcaccttgttaatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaatt |
113 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||||| |||||| |||| |||||||| ||||| ||||| || | || |||||||| |||| |
|
|
| T |
11945877 |
atcataaggactaataatgttaccttgttaatcttgtttctaggtatgcacttgtaacaggagctaataagggaattggttatgggatatgcaagaaatt |
11945778 |
T |
|
| Q |
114 |
ggcttc |
119 |
Q |
| |
|
|||||| |
|
|
| T |
11945777 |
ggcttc |
11945772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 11925841 - 11925937
Alignment:
| Q |
23 |
actcataatgtcaccttgttaatcttgtttctagatatgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttc |
119 |
Q |
| |
|
||||||||| | ||| | |||||||||||||||| |||||| |||| |||||||| ||||| ||||| || | || | |||||||| |||||||||| |
|
|
| T |
11925841 |
actcataatcttaccatattaatcttgtttctaggtatgcacttgtaacaggagctaataagggaattggttatggaatatgcaagaaattggcttc |
11925937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 11952991 - 11952951
Alignment:
| Q |
55 |
agatatgcagttgttacaggagcaaataaaggaataggatt |
95 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
11952991 |
agatatgctgttgttacaggatcaaataaaggtataggatt |
11952951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 25858940 - 25859114
Alignment:
| Q |
60 |
tgcagttgttacaggagcaaataaaggaataggatttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaag |
159 |
Q |
| |
|
|||| |||| ||||||||||| | ||||| ||||||||| ||||||||||||||| |||||| || |||| |||||||| | ||||||||||| ||| |
|
|
| T |
25858940 |
tgcacttgtgacaggagcaaacaggggaattggatttgcaatatgcaagcaattggtttctaatggtatcaaagtggtgctggcagcaagagatgagaag |
25859039 |
T |
|
| Q |
160 |
agaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtc |
234 |
Q |
| |
|
|||||||||||||||||||| || |||| | ||| | || ||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
25859040 |
agaggtcttgaagctgttgataaattgaaggatcttgcacttcctggccatgtggttttccatcaacttgatgtc |
25859114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University