View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_high_2 (Length: 629)
Name: NF6820_high_2
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 6 - 613
Target Start/End: Complemental strand, 6021878 - 6021271
Alignment:
| Q |
6 |
gagatgaattcaggggaaagttttgactttttagtactcttcctttctgtaacagaaggtgtggattttcttgacaaactgctttttctttttctagtat |
105 |
Q |
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| T |
6021878 |
gagatgaattcaggggaaagttttgactttttagtactcttcctttctgtaacagaaggcgtggattttcttgacaaactgctttttctttttctagtat |
6021779 |
T |
|
| Q |
106 |
tgacagtgtttctattactatccatttgcagtcttaaactggatgaagcagatccagcaagctctttgcattggttttgcactgaagttaaatcctcagg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021778 |
tgacagtgtttctattactatccatttgcagtcttaaactggatgaagcagatccagcaagctctttgcattggttttgcactgaagttaaatcctcagg |
6021679 |
T |
|
| Q |
206 |
tgggtcatccacaacatccagcctttgttttccagatcttcttacctgcctttttccagcaatcttctcaggaaattgcatctcattatcttgtttagat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021678 |
tgggtcatccacaacatccagcctttgttttccagatcttcttacctgcctttttccagcaatcttctcaggaaattgcatctcattatcttgtttagat |
6021579 |
T |
|
| Q |
306 |
tctgatgtatatgaattcttagctgtcttcctatcaccaatgttttgaactcctaatatattggagactgtaaaagcaattggaggtgttgattctgtac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6021578 |
tctgatgtatatgaattcttagctgtcttcctatcaccaatgttttgaactcctaatatattggagactgtacaagcaattggaggtgttgattctgtac |
6021479 |
T |
|
| Q |
406 |
tagtaacaaaagaaaccttcttcccccttttattagactttttcaggttagaagctttgtgcttgtagtccaatgattgctcctcaatgacttttgatgt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021478 |
tagtaacaaaagaaaccttcttcccccttttattagactttttcaggttagaggctttgtgcttgtagtccaatgattgctcctcaatgacttttgatgt |
6021379 |
T |
|
| Q |
506 |
tatatctgtatccatattaatttcatcactcagacaatttagttccctaatatggtcttgcctagatttttctctagccttcctgcttctctttgtagaa |
605 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021378 |
tatatctgcatccatattaatttcatcactcagacaatttagttccctaatatggtcttgcctagatttttctctagccttcctgcttctctttgtagaa |
6021279 |
T |
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| Q |
606 |
ttcttttt |
613 |
Q |
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|||||||| |
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| T |
6021278 |
ttcttttt |
6021271 |
T |
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