View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_high_6 (Length: 401)
Name: NF6820_high_6
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 26 - 389
Target Start/End: Complemental strand, 48276479 - 48276116
Alignment:
| Q |
26 |
attactagggcctcttcctatagggttgggacnnnnnnnntccctccaactcaagacattgctgcacaagtaactcatatagtcttcaatgtgatcaaag |
125 |
Q |
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| T |
48276479 |
attactagggcctcttcctatagggttgggacaaaaaaaatccctccaactcaagacattgatgcacaagtaactcatatagtcttctatgtgatcaaag |
48276380 |
T |
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| Q |
126 |
aattaaacagtgtacttacgttaacaatcttgaagcagtaattcaaacagaaagcgcaaattgacacaagttgttgaatgataatgcatgattgcatcca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48276379 |
aattaaacagtgtacttacgttaacaatcttgaagcagtaattcaaacagaaagcgcaaattgacacaagttgttgaatgataatgcatgattgcatcca |
48276280 |
T |
|
| Q |
226 |
atgagaagaatcaatatctgttnnnnnnnnncagcaacatgccaaaggggtgtgagagagaaaataaaaagtggtaaagatgtgtgagaaacaaagaagt |
325 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48276279 |
atgagaagaatcaatatctgttaaaaaaaaacagcaacatgccaaaggggtgtgagagagaaaataaaaagtggtaaagatgtgtgagaaacaaagaagt |
48276180 |
T |
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| Q |
326 |
ataaagttgaaaggtaccctttgaatttcttagaagtatgtattaattcatcaaacaccaaact |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48276179 |
ataaagttgaaaggtaccctttgaatttcttagaagtatgtattaattcatcaaacaccaaact |
48276116 |
T |
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