View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_high_9 (Length: 391)
Name: NF6820_high_9
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 6026412 - 6026735
Alignment:
| Q |
17 |
atgaactgaatgcacaaaccaaacataaatcaaactcacatcctatacgtactagggttaatccatcgtatctcaacgattaaatcgagatacaatcatg |
116 |
Q |
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| T |
6026412 |
atgaactgaatgcacaaaacaaacataaatcaaactcacatcctatacgtactagggttaatccatcgtatctcaacggttaaatcgagatacaatcatg |
6026511 |
T |
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| Q |
117 |
attcaaccgtcgatattttattggatgtggtggaccgttggagagaatatgtctgacattaatcaaagtggctaaaaaagatggagcttagccgtaggta |
216 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
6026512 |
attcaaccttcgaaattttattggatgtggtggaccgttgcagagaatatgtctgacattaatcaaagttgctaaaaaagatggagcctagccgtaggta |
6026611 |
T |
|
| Q |
217 |
tacataccaacggatgtgccctaggaagggtcaatccaggcccttcctccatatcaacaattccattaccatcttcaccaaccttccaatcaaaacactg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6026612 |
tacataccaacggatgtgccctaggaagggtcaatccaggcccttcctccatttcaacaattccattaccatcttcaccaaccttccaatcaaaacactg |
6026711 |
T |
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| Q |
317 |
aatcatggcagccagtgttgtatg |
340 |
Q |
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|||||||| ||||||||||||||| |
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| T |
6026712 |
aatcatggtagccagtgttgtatg |
6026735 |
T |
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