View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6820_low_1 (Length: 815)
Name: NF6820_low_1
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 38 - 807
Target Start/End: Original strand, 4358402 - 4359171
Alignment:
| Q |
38 |
atactaatgaaatagctatatagatgaaaatttattagcttcgttattatatctttgttacnnnnnnnnnn--tggaaattaagtgaagaaaaagaccgg |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4358402 |
atactaatgaaatagctatatagatgaaaatttattagcttcgtgattatatctttgttacaaaaaataaaaatggaaattaagtgaagaaaaagaccgg |
4358501 |
T |
|
| Q |
136 |
gatcaaattaattacacttgtaataacattttatttttcatatgtaagcaatagaaggcaattaataaacatacaaatatattaagtcctcaacataaat |
235 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |
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| T |
4358502 |
gatcaaattatttacacttgtaataacattttatttttcatatgtaagcaatagaagccaactaataaacatacaaatat--taagtcctcaacataaat |
4358599 |
T |
|
| Q |
236 |
aacaagcatcctctcttacatccacaaagacataagattatccaaaattcataattaacattaagaaatgttaagaaacaaaattatgaaacaagattca |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
4358600 |
aacaagcatcctctcttacatccacaaagacataagattatccaaaattcataattaacattaagaaatgttaagaaacaaaactatgaaacaagactca |
4358699 |
T |
|
| Q |
336 |
atcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgag |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4358700 |
atcttgtttcctcaactgcgagtagaacctccttatgaatgcatcggcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgag |
4358799 |
T |
|
| Q |
436 |
tcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctcca |
535 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
4358800 |
tcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagcttcgacaattacttcattattgtttaccatgctctcca |
4358899 |
T |
|
| Q |
536 |
acacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaa |
635 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4358900 |
acacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaa |
4358999 |
T |
|
| Q |
636 |
tttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtga |
735 |
Q |
| |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4359000 |
tttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtga |
4359099 |
T |
|
| Q |
736 |
tgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgatgtccatc |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4359100 |
tgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatc |
4359171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 298 - 807
Target Start/End: Complemental strand, 4353608 - 4353100
Alignment:
| Q |
298 |
aagaaatgttaagaaacaaaattatgaaacaagattcaatcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacct |
397 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
4353608 |
aagaaatgttaagaaacaaaactatgaaacaagactcaatcttgtttcctcaactgcgagtagaacctccttatgaatgcatcggcagccttgtccacct |
4353509 |
T |
|
| Q |
398 |
cggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagc |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
4353508 |
cggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagc |
4353409 |
T |
|
| Q |
498 |
ctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagta |
597 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| | |
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|
| T |
4353408 |
ttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagca |
4353309 |
T |
|
| Q |
598 |
cacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353308 |
cacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgt |
4353209 |
T |
|
| Q |
698 |
cgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgtt |
797 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||| |
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|
| T |
4353208 |
cattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgtt |
4353110 |
T |
|
| Q |
798 |
gatgtccatc |
807 |
Q |
| |
|
|| ||||||| |
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|
| T |
4353109 |
gaggtccatc |
4353100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 446 - 807
Target Start/End: Complemental strand, 4350083 - 4349713
Alignment:
| Q |
446 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
545 |
Q |
| |
|
|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
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|
| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
546 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
636 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
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| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
637 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
736 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
737 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgatgtccatc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatc |
4349713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 4350213 - 4350113
Alignment:
| Q |
301 |
aaatgttaagaaacaaaattatgaaacaagattcaatcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacctcgg |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || ||| | || | |||||||| |||| ||||||||||| ||||| || ||||||||||| ||||||| |
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|
| T |
4350213 |
aaatgttaagaaacaaaattgtgaaacaaaactccatcctcttacttcaactgcaagtaaaacctctttataaatgcttcggcagccttgtctacctcgg |
4350114 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
|
| |
|
|
| T |
4350113 |
c |
4350113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 4353659 - 4353612
Alignment:
| Q |
216 |
attaagtcctcaacataaataacaagcatcctctcttacatccacaaa |
263 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
4353659 |
attaagtcctcaaaaaaaataacaagaatcctctcttacatccacaaa |
4353612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 4353743 - 4353665
Alignment:
| Q |
111 |
gaaattaagtgaagaaaaagaccgggatcaaattaattacacttgtaataaca-ttttatttttcatatgtaagcaata |
188 |
Q |
| |
|
||||| || |||||| |||||| | ||||||||||||||| ||| | |||||| ||||||||||||||| ||||||||| |
|
|
| T |
4353743 |
gaaatcaactgaagagaaagacagcgatcaaattaattacccttcttataacatttttatttttcatatataagcaata |
4353665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 703 - 797
Target Start/End: Original strand, 43475430 - 43475530
Alignment:
| Q |
703 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
796 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
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|
| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
797 |
t |
797 |
Q |
| |
|
| |
|
|
| T |
43475530 |
t |
43475530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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