View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_10 (Length: 389)
Name: NF6820_low_10
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 168 - 365
Target Start/End: Original strand, 9804904 - 9805102
Alignment:
| Q |
168 |
tcagctctacaacaaaaggctcgaaaacataatgccccaaaaccctacaggaaagcgtagaattgccgacagaagnnnnnnnn-cactaaaaagaataca |
266 |
Q |
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| T |
9804904 |
tcagctctacaacaaaaggctcgaaaacataatgccccaaaaccctacaggaaagcgtagaattgccgacagaaggaaaaaaaacactaaaaagaataca |
9805003 |
T |
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| Q |
267 |
gctagctccatcagcataacacnnnnnnntccagaaaaacatagcttgacaagaaataatcatacacaagtgaattgttcaacaaatctcatagaaatt |
365 |
Q |
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| T |
9805004 |
gctagctccatcagcataacacaaaaaaatccagaaaaacatagcttgacaagaaataatcatacacaagtgaattgttcagcaaacctcatagaaatt |
9805102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 9804762 - 9804846
Alignment:
| Q |
26 |
aaaatagcaaaccataaagttgaaacctgttaaaaattgaaagccataaagttgaaacataaccctcatatatcgatcctaattg |
110 |
Q |
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| T |
9804762 |
aaaatagcaaaccataaagttgaaaccagttaaaaattgcaagccctaaagttgaaacataaccctcatatatcgatcctaattg |
9804846 |
T |
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