View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_11 (Length: 383)
Name: NF6820_low_11
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 10345027 - 10344665
Alignment:
| Q |
16 |
ggacatcacaaaacgttaccgactcaat-catttttcgtagaatttaggtgggtccatactagttaaccatacctggtgcaatcaacatagaatggctat |
114 |
Q |
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| T |
10345027 |
ggacatcacaacacgttaccgactcaatacatttttcgtagaatttaggtgggtccatactagttaaccatacctcgtgcaatcaacatagaatggctat |
10344928 |
T |
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| Q |
115 |
aaccccaactaggcacacaattcagcatatcatgtttattcacatataagcacacataaagcacataaaccaaccaaatgcatttaagtaagt-atgata |
213 |
Q |
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| T |
10344927 |
aaccccaactaggcacacaattcagcatatcatgtttattcacatataagcacacataaagcacataaaccaaccaaatgcatttaagtaagtaatgata |
10344828 |
T |
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| Q |
214 |
ttgctagagaatgcccttatcgtatttcaattttccttaaacatgtacaactctacaactcgtatgctctacaacacaaacaactccaactcctcgagtt |
313 |
Q |
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| T |
10344827 |
ttgctagagaatgcccttatcgtatttcaattttccttaaacatgtacaactctacaactcgtatgctctacaacacaaacgactccacctcctcgagtt |
10344728 |
T |
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| Q |
314 |
aagtaacctaatacacacaacaactcaagtaaacaccaattcttaaagttttctccctatccc |
376 |
Q |
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| T |
10344727 |
aagtaacctaatacacacgacaactcaagtaaacaccagttcttaaagttttctacctatccc |
10344665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 365
Target Start/End: Complemental strand, 10346899 - 10346640
Alignment:
| Q |
112 |
tataaccccaactaggcacacaattcagcatatcatgtttattcacatataagcacacata-aagcacataaaccaaccaaatgcatttaagtaagta-- |
208 |
Q |
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| T |
10346899 |
tataaccccaacttagcatacaattcaacgtatcatatctgttcacggataagcacacatacaagcacataaaccaaccaa-tgcatttaagtaagtaca |
10346801 |
T |
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| Q |
209 |
---tgatattgct----agagaatgcccttatcgtatttcaattttccttaaacatgtacaactctacaactcgtatgctctacaacacaaacaactcca |
301 |
Q |
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| T |
10346800 |
gtatgatattaattattatggaatgcccttatcgtaattcaattttccttacacacggacaactctacaactcgtttgcgttacaacacgaacgactcaa |
10346701 |
T |
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| Q |
302 |
actcctcgagttaagtaacctaatacacacaacaactcaagtaaacaccaattcttaaagtttt |
365 |
Q |
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| T |
10346700 |
actcct---attaagtatgctaatacacacaacaactcaagtaaacactagttcttaaggtttt |
10346640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 10347037 - 10346965
Alignment:
| Q |
36 |
gactcaatcatt-tttcgtagaatttaggtgggtccatactagttaaccatacctggtgcaatcaacatagaa |
107 |
Q |
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| T |
10347037 |
gactcaataattcttttgtagaatttaggtgggttcattctaattaaccatatcctgtgcaatcaacatagaa |
10346965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 16585751 - 16585696
Alignment:
| Q |
134 |
attcagcatatcatgtttattcacatataagcacacata-aagcacataaaccaac |
188 |
Q |
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| T |
16585751 |
attcagcatatcatgtttattcacaaacaagcacacatataagcacataaatcaac |
16585696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 3385217 - 3385269
Alignment:
| Q |
140 |
catatcatgtttattcacatataagcacacata-aagcacataaaccaaccaa |
191 |
Q |
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| T |
3385217 |
catatgatgtttattcacaaacaagcacacatacaagcacataaatcaaccaa |
3385269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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