View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6820_low_13 (Length: 348)
Name: NF6820_low_13
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_13 |
 | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0023 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 23196091 - 23196429
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||| | ||||||||||||||||||| ||||||||||||||||||||| || |||| || || ||||||||||| || ||||| |
|
|
| T |
23196091 |
caactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgccgtctt |
23196190 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttctg |
199 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| ||| ||| ||| ||||||| |||||| |
|
|
| T |
23196191 |
gatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctg |
23196289 |
T |
|
| Q |
200 |
tttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaa--actttttgtgtaaaccgcccattagttagccccatgaaatg |
297 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
23196290 |
tttgtagcatttcttttgtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaaatg |
23196389 |
T |
|
| Q |
298 |
ctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23196390 |
ctatgtttgaatttgtcttttcgaattactcttgtatgat |
23196429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 23621696 - 23622033
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| ||||| ||||||||||||||||||||| || | || || || ||||||||||| || ||||| |
|
|
| T |
23621696 |
caactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctgaagatgaacagtacaaccttcagcgtttctgccttagatgccgtctc |
23621795 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctg |
199 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||| ||| || ||| ||| ||| ||||||| |||||| |
|
|
| T |
23621796 |
gatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcaaaggaaaatccttttagaa-ttttctaatttctg |
23621894 |
T |
|
| Q |
200 |
tttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ctttttgtgtaaaccgcccattagttagccccatgaaatgc |
298 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
23621895 |
tttgtagcatttcttttgtaatggtttactttgcgctcttttagagttcattttgaagtctttttgtgtagaccgcccattagttggccttatgaaatgc |
23621994 |
T |
|
| Q |
299 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23621995 |
tatgtttgaatttgtcttttcgaattactcttgtatgat |
23622033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 22643261 - 22642923
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||| | ||||||||||||||||||| ||||||||||||||||||||| ||| |||| || || ||||||||||| || || || |
|
|
| T |
22643261 |
caactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctgaagatgaacagtataatcttcagcgtttctgccttagatgccgcctc |
22643162 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttctg |
199 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| ||| ||| ||| ||||||| |||||| |
|
|
| T |
22643161 |
gatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctg |
22643063 |
T |
|
| Q |
200 |
tttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaa--actttttgtgtaaaccgcccattagttagccccatgaaatg |
297 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || | |||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
22643062 |
tttgtagcatttcttttgtaatggtttactttgctctcttttagagctcattttgaattcttttttgtgtaaaccacccattagttggccttatgaaatt |
22642963 |
T |
|
| Q |
298 |
ctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22642962 |
ttatttttgaatttatcttttcgaattactcttgtatgat |
22642923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24954652 - 24954482
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||| |||||||| ||| | |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24954652 |
caactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaatatgatctccagcgcttctgccttaggtgtcgtctg |
24954553 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaa |
171 |
Q |
| |
|
|| ||||||||||||||||||||||| || || | |||||||| |||||||||| |||||||||||| |
|
|
| T |
24954552 |
gacagcgagattcgatggttcctcgatctctttagctttggccaacttatgtaggggtctccatcgaagaa |
24954482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 24954477 - 24954365
Alignment:
| Q |
194 |
tttctgtttatagcatttcttttgtaacggtttaccttacgctctttt-agagctcattttgaaactttttgtgtaaaccgcccattagttagccccatg |
292 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| | ||||||||| ||||| |||||||| || ||||||||||||||||||||| || |||| |
|
|
| T |
24954477 |
tttctgtttgtagcatttcttttgtaatggtttacttcgcgctctttttagagcctcttttgaaa--ttatgtgtaaaccgcccattagttggcttcatg |
24954380 |
T |
|
| Q |
293 |
aaatgctatgtttga |
307 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
24954379 |
aaatgctatatttga |
24954365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 24921424 - 24921320
Alignment:
| Q |
28 |
caactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcctcgac |
127 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||| || |||| |||| || |||||| | |||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
24921424 |
caactatcgaggatttcatcctgctgaggatgaactgtacaatcttcaacatttttgccttcgttgtcgtctcgatagtgagataagatggtttctcgac |
24921325 |
T |
|
| Q |
128 |
ctttt |
132 |
Q |
| |
|
|||| |
|
|
| T |
24921324 |
atttt |
24921320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 4085 - 4423
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||| | || |||||||||||||||| ||||||||||||||||||||| || |||| || || ||||||||||| |||||||| |
|
|
| T |
4085 |
caactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgtcgtctt |
4184 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttctg |
199 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||| ||| ||| ||| ||| ||||||| |||||| |
|
|
| T |
4185 |
gatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtacttccatcgaaggaaaatccttttagaa-ttttctaatttctg |
4283 |
T |
|
| Q |
200 |
tttatagcatttc-ttttgtaacggtttaccttacgctcttttagagctcattttgaa-actttttgtgtaaaccgcccattagttagccccatgaaatg |
297 |
Q |
| |
|
||| ||||||||| |||||||| ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4284 |
tttgtagcatttctttttgtaatggtttactttgcgctcttttagagctcattttgaagtctttttgtgtaaaccgcccattagttggccttatgaaatg |
4383 |
T |
|
| Q |
298 |
ctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4384 |
ctatgtttgaatttgtcttttcgaattactcttgtatgat |
4423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 74371 - 74033
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| |
|
|
| T |
74371 |
caactgtcgtggagatggactaaggcgtaactaccgagggtatcatcctgctgaagatgaacagtatgatcttcagcgtttctgccttagatgtcgtctc |
74272 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| |||||| |||| ||||||||| ||||||||||| ||| |||||| | ||||||| ||||| | |
|
|
| T |
74271 |
gatagtgagcttcgatggtttctcgacctttttgggttttgccaacttatgtaggtccttccatcgaggaaaaatccttttagaattttctaatttctat |
74172 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttaccttacgctc-ttttagagctcattttgaa-actttttgtgtaaaccgcccattagttagccccatgaaatgc |
298 |
Q |
| |
|
| |||||||||||||||||| ||||||| || ||||| ||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
74171 |
tgatagcatttcttttgtaatggtttactttgcgctctttttagagcccattttgaagtctttttgtgtaaaccgcccattagttggctttatgaaatgc |
74072 |
T |
|
| Q |
299 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
74071 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
74033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 18166882 - 18167203
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||| ||||||||||||| ||||||||||||||||||||| || |||| || || ||||||||||| || ||||| ||||| ||| ||| |
|
|
| T |
18166882 |
gatggactaaggcgtaactatcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgccgtcttgatagtgagcttc |
18166981 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttctgtttatagcatttc |
212 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| ||| ||| ||| ||||||| ||||||||| ||||||||| |
|
|
| T |
18166982 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcatttc |
18167080 |
T |
|
| Q |
213 |
ttttgtaacggtttaccttacgctcttttagagctcattttgaa--actttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatt |
310 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
18167081 |
ttttgtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaatt |
18167180 |
T |
|
| Q |
311 |
tatcttttcgaattactcttgta |
333 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
18167181 |
tgtcttttcgaattactcttgta |
18167203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14329233 - 14329550
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14329233 |
caactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctccaacgcttctgccttaggtgtcgtctg |
14329332 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||| || || || |||||||| |||||||||| |||||||||||| | | ||||||| |
|
|
| T |
14329333 |
gacagcgatattcgatggttcctcgatctctttggctttggccaacttatgtagggatctccatcgaagaatc------------------attttctgt |
14329414 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttaccttacgctc-ttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgct |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||| | ||||| ||||||||| ||||| ||| || ||||||||||||||||||| | || ||||||||||| |
|
|
| T |
14329415 |
ttgtagcatttcttttgtaacggtttacttcgcgctctttttagagcctatttttaaa--ttatgtgtaaaccgcccattagctggcttcatgaaatgct |
14329512 |
T |
|
| Q |
300 |
atgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
14329513 |
atatttgagtctatcttttcgaattactcttgtatgat |
14329550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 28542 - 28221
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||||||||||||||||| || |||| || || ||||||||||| |||||||| ||||| ||| ||| |
|
|
| T |
28542 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaagatgaactgtacaatcttcagcgtttctgccttagatgtcgtcttgatagtgagcttc |
28443 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatttct |
213 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| | ||| ||| ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
28442 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaaatcct---tttagaa-ttttctaatttctgtttctagcatttct |
28347 |
T |
|
| Q |
214 |
tttgtaacggtttaccttacgctcttttagagctcattttgaaactt--tttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaattt |
311 |
Q |
| |
|
||||||| ||||||| || |||||||||||||| | ||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
28346 |
tttgtaatggtttactttgcgctcttttagagcccgttttgaagtttcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaattt |
28247 |
T |
|
| Q |
312 |
atcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28246 |
gtcttttcgaattactcttgtatgat |
28221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 127780 - 128118
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| || |||||| | ||||||||||||||||||| ||||||||| ||||||||||| || |||| || || ||||||||||| || ||||| |
|
|
| T |
127780 |
caactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgcggaagatgaacagtacaatcttcagcgtttctgccttagatgccgtctt |
127879 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttctg |
199 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||||| |||||||| ||| ||| ||| ||| ||| ||||||| |||||| |
|
|
| T |
127880 |
gatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccattgaaggaaaatccttttagaa-ttttctaatttctg |
127978 |
T |
|
| Q |
200 |
tttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaa-actt-tttgtgtaaaccgcccattagttagccccatgaaatg |
297 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || ||||||||||||||||||||| || ||| |||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
127979 |
tttgtagcatttcttttgtaatggtttactttgcgctcttttagagctcatttttaagtcttgtttgtgtaaaccacccattagttggccttatgaaatg |
128078 |
T |
|
| Q |
298 |
ctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
128079 |
ctatgtttgaatttgtcttttggaattactcttgtatgat |
128118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 18285 - 18610
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | ||||||||||||||||||| || |||| || || ||||||||||| |||| ||| ||||| ||| ||| |
|
|
| T |
18285 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaagatgaattgtacaatcttcagcgtttctgccttagatgtcatcttgatagtgagcttc |
18384 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcatttc |
212 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||||||| ||||||||| |
|
|
| T |
18385 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcatttc |
18483 |
T |
|
| Q |
213 |
ttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatt |
310 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
18484 |
ttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaatt |
18583 |
T |
|
| Q |
311 |
tatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
18584 |
tgtcttttcgaattactcttgtatgat |
18610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 12534 - 12689
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | ||||||||||||||||||| || |||| || || ||||||||||| |||| ||| ||||| ||| ||| |
|
|
| T |
12534 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaagatgaattgtacaatcttcagcgtttctgccttagatgtcatcttgatagtgagcttc |
12633 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag |
169 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
12634 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaag |
12689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 22080907 - 22080737
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22080907 |
caactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccagcgcttctgccttaggtgtcgtcta |
22080808 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaa |
171 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22080807 |
gatagcgagattcgatggttcctcgatctttttggatttggccagcttatgtagggctttccatcgaagaa |
22080737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 41375655 - 41375972
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || || |||||||||||||| | ||||||||| ||| |||||||| |
|
|
| T |
41375655 |
caactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcacttctgcctcaggcgtcgtctg |
41375754 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||||||| || ||||||| |||||||||| |||| |||||| | | |
|
|
| T |
41375755 |
gatagcgagattcgatggttcctcgatctctttggctttggccaacttgtgtagggttttccatcgaaaaacc-----------attttct------ttt |
41375837 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttac-cttacgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgct |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
41375838 |
ttatagcatttcttttgtaatggtttacttttgcgctcttctagagcttattttgaaac--tttgtgtaaaccgcccattagttggcctaatggaatgct |
41375935 |
T |
|
| Q |
300 |
atgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
41375936 |
atgtttgagtttat-ttttcgaattactcttgtatgat |
41375972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 32904 - 33230
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||||||||| ||||||| || ||||||| | ||||||||||| ||||| || || || ||| ||| |
|
|
| T |
32904 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaggatgaactgtacaatctccagtgtttctgccttagatgtcgccttgacagtgagcttc |
33003 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagcattt |
211 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| |||||||| |
|
|
| T |
33004 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagcattt |
33102 |
T |
|
| Q |
212 |
cttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
309 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
33103 |
cttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaat |
33202 |
T |
|
| Q |
310 |
ttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
33203 |
ttgtcttttcgaattactcttgtatgat |
33230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 14562490 - 14562816
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||||||||| ||||||| || ||||| | | ||||||||||| ||||| || ||||| ||| ||| |
|
|
| T |
14562490 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaggatgaactgtacaatctcaagagtttctgccttagatgtcgccttgatagtgagcttc |
14562589 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagcattt |
211 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| |||||||| |
|
|
| T |
14562590 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagcattt |
14562688 |
T |
|
| Q |
212 |
cttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
309 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
14562689 |
cttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaat |
14562788 |
T |
|
| Q |
310 |
ttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
14562789 |
ttgtcttttcgaattactcttgtatgat |
14562816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 13284627 - 13284942
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||| ||||||| ||| |||| || |||||||| ||| | |||||||| ||||| ||| ||| |
|
|
| T |
13284627 |
gatgggttgagacgcaactatcgaggaattcatcctgctgaggatgaactatacaatcttcagcgcttctgtcttcgatgtcgtcttgatagtgagcttc |
13284726 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgttt-atagcatttc |
212 |
Q |
| |
|
| ||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||| | |||||| | |||||| ||| |||| ||||||| | |
|
|
| T |
13284727 |
ggtggtttctcgacctttttggctttggccaacttatgtaggtcgttccatcgaagaaacatccttttagaattttct--tttaagtttcatagcatccc |
13284824 |
T |
|
| Q |
213 |
ttttgtaacggtttac-cttacgctcttttagagctcattttgaaacttt--ttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
309 |
Q |
| |
|
|||||||| ||||||| || ||||| |||||||| ||||||| || ||| | |||||||||||||||||| | ||| |||||||||||| || ||| |
|
|
| T |
13284825 |
ttttgtaatggtttacttttgcgctc-tttagagcccattttggaatttttatcgtgtaaaccgcccattagctggccttatgaaatgctatattggaac |
13284923 |
T |
|
| Q |
310 |
ttatcttttcgaattactc |
328 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
13284924 |
ttttcttttcgaattactc |
13284942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14688702 - 14689018
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14688702 |
caactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttctgccttaggtgtcgtctg |
14688801 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|| ||||||||||||||||||||| | || || || |||||||| ||||||||| ||||||||||||| | | ||||||| |
|
|
| T |
14688802 |
gacagcgagattcgatggttcctcaatctctttggctttggccaacttatgtaggtttttccatcgaagaatc------------------attttctgt |
14688883 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttaccttacgctc-ttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgct |
299 |
Q |
| |
|
|| ||||||||| ||||||| ||||||| || |||| |||||||| | ||||||||| ||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
14688884 |
ttgtagcatttc-tttgtaatggtttactttgtgctctttttagagtttattttgaaa--ttttgtgtaaaccgcccatcagttggccccatgaaatgct |
14688980 |
T |
|
| Q |
300 |
atgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14688981 |
atgtttgaatttatcttttcgaattactcttgtatgat |
14689018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 7360704 - 7361020
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||| |||||||| |||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
7360704 |
caactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttcttcctcaggtgtcgtctg |
7360803 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| || || || |||||||| ||||||||| | ||||||||||||| | | ||||||| |
|
|
| T |
7360804 |
gacagcgagattcgatggttcctcgatctctttggctttggccaacttatgtaggactttccatcgaagaatc------------------attttctgt |
7360885 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgcta |
300 |
Q |
| |
|
|| ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
7360886 |
ttgtagcatttcttttgtaatggtttacttcgcgctcttttagagcttattttgaaa--ttttgtgtaaaccgcccattagttggcttaatgaaatgcta |
7360983 |
T |
|
| Q |
301 |
tgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7360984 |
tgtttgggtttatcttttcgaattactcttgtatgat |
7361020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 10157842 - 10157527
Alignment:
| Q |
23 |
aggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcc |
122 |
Q |
| |
|
||||||||||||||||| | |||||||||||| || |||| |||| |||| || || ||||||||||||||| |||| ||||| ||| |||||||||| | |
|
|
| T |
10157842 |
aggcgcaactatcgaggatttcatcctgctgaggacgaactatataatcttcagcgtttctgccttaggtgttgtctcgatagtgagcttcgatggtttc |
10157743 |
T |
|
| Q |
123 |
tcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatttcttttgtaacg |
222 |
Q |
| |
|
|||||||||| || |||||||| ||||||||| | ||||||||||||| | |||| | ||||||| |||| ||| ||||||||||||||||| | |
|
|
| T |
10157742 |
tcgacctttttggctttggccaacttatgtaggtcattccatcgaagaaaaatcattttagaattttctaatttccttttgtagcatttcttttgtaatg |
10157643 |
T |
|
| Q |
223 |
gtttaccttacgctcttttagagctcattttgaaactt--tttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatcttttcg |
320 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||||||||| || |||||||| |
|
|
| T |
10157642 |
gtttactttgcgctcttt-agagcccattttgaagtttattttgtgtaaaccgcccattagttggccttatgaaatgccatgtttgaacttttcttttcg |
10157544 |
T |
|
| Q |
321 |
aattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10157543 |
aattactcttgtatgat |
10157527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 10787091 - 10786774
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
10787091 |
caactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttctgtctcaggtgtcgtctg |
10786992 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|||||||| |||||||||||||||| || || | |||||||| || |||||| |||||||||| | || ||||| |||| |
|
|
| T |
10786991 |
gatagcgaagttcgatggttcctcgatctctttagctttggccaacttgcgtagggttttccatcgaaaagcc-----------attttc---tttc--- |
10786909 |
T |
|
| Q |
201 |
ttatagcatttcttttgtaacggtttac-cttacgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagc-cccatgaaatgc |
298 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10786908 |
ttatagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac--tttgtgtaaaccgcccattagttggctttaatgaaatgc |
10786811 |
T |
|
| Q |
299 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||| || | | ||||||||||||||||||||||| |
|
|
| T |
10786810 |
tatgttt--atgtttattttcgaattactcttgtatgat |
10786774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 38834 - 38526
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||||||||| ||||||| || ||||||| | ||||||||||| ||||| || || || ||| ||| |
|
|
| T |
38834 |
gatggactaaggcgcaactatcgaggatttcatcctgctgaggatgaactgtacaatctccagtgtttctgccttagatgtcgccttgacagtgagcttc |
38735 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttc-tgtttatagcattt |
211 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | |||||||||| ||| ||| ||| ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
38734 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagcattt |
38636 |
T |
|
| Q |
212 |
cttttgtaacggtttaccttacgctcttttagagctcattttgaa-act-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
309 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
38635 |
cttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaat |
38536 |
T |
|
| Q |
310 |
ttatcttttc |
319 |
Q |
| |
|
|| ||||||| |
|
|
| T |
38535 |
ttgtcttttc |
38526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 19327 - 19002
Alignment:
| Q |
14 |
gatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| | ||||||||| || ||||||| || ||||||| | ||||||||||| ||||| || ||||| ||| ||| |
|
|
| T |
19327 |
gatggactaaggcgcaactatcgaggatttcatcctgccgaggatgaactttacaatctccagtgtttctgccttagatgtcgccttgatagtgagcttc |
19228 |
T |
|
| Q |
114 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaa-gaacctcccttttgaagttttctagtttc-tgtttatagcattt |
211 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| | |||||||||| ||| ||| ||| ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
19227 |
gatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagcattt |
19129 |
T |
|
| Q |
212 |
cttttgtaacggtttaccttacgctcttttagagctcattttgaa-act-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
309 |
Q |
| |
|
||||||| | ||| ||| || ||||||||||| || ||||||||| || |||||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
19128 |
cttttgtcatggtctactttgcgctcttttag-gcccattttgaagtctcttttgtgtaaaccgtccattagttggccttatgaaatgctatgtttgaat |
19030 |
T |
|
| Q |
310 |
ttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
19029 |
ttgtcttttcgaattactcttgtatgat |
19002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 19030438 - 19030754
Alignment:
| Q |
26 |
cgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcctcg |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||| | || || | ||||||||||| |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
19030438 |
cgcaactatcgagggtttcatcctgctgaggatgaactatataaccttcagcatttctgccttagatgtcgtctcgatagtgagataagatggtttctcg |
19030537 |
T |
|
| Q |
126 |
accttttcgggtttggccagattatgtagggccttccatcgaagaacc-tcccttttgaagttttct----agtttctgtttatagcatttcttttgtaa |
220 |
Q |
| |
|
||||||| || |||||||| ||||||||| | ||||||||||||| | |||||| | |||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
19030538 |
acctttttggctttggccaacttatgtaggtcattccatcgaagaaaaattccttttagaattttcttttaagtttcattttgtagcatttcttttgtaa |
19030637 |
T |
|
| Q |
221 |
cggtttaccttacgctcttttagagctcattttgaaact--ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatctttt |
318 |
Q |
| |
|
||||||| || |||||||| ||||| ||||||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||| |
|
|
| T |
19030638 |
tggtttactttgcgctcttt-agagcccattttggaattccttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaactt-tctttt |
19030735 |
T |
|
| Q |
319 |
cgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
19030736 |
cgaattactcctgtatgat |
19030754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1729909 - 1729591
Alignment:
| Q |
1 |
caactgtcacggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| | |||||| || || |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1729909 |
caactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaatatgatctccagcgcttctgcctcaggtgtcgtctg |
1729810 |
T |
|
| Q |
101 |
gatagcgagattcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||||||| || |||||| ||||||| || |||| |||||| | | |
|
|
| T |
1729809 |
gatagcgagattcgatggttcctcgatctctttggctttggccaacttgcgtagggttttccatcaaaaaacc-----------attttct------ttt |
1729727 |
T |
|
| Q |
201 |
ttatagcatttcttt-tgtaacggtttac-cttacgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgc |
298 |
Q |
| |
|
||||||||||| ||| | ||| ||||||| || ||||||| ||||||| |||||||||| |||||||||||| |||||||||| ||| ||| ||||| |
|
|
| T |
1729726 |
ttatagcatttttttctataatggtttacttttgcgctcttctagagcttattttgaaac--tttgtgtaaaccacccattagttggcctaatggaatgc |
1729629 |
T |
|
| Q |
299 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
1729628 |
tatgtttgagtttat-tttttgaattactcttgtatgat |
1729591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 22338857 - 22338983
Alignment:
| Q |
28 |
caactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcctcgac |
127 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||| || |||| |||| || |||||| | |||||| | ||||||||||| |||||||||| ||| |
|
|
| T |
22338857 |
caactatcgagggtttcttcctgctgaggatgaactgtacaatcttcaacatttttgccttcgctgtcgtttcgatagcgagataagatggttccttgac |
22338956 |
T |
|
| Q |
128 |
cttttcgggtttggccagattatgtag |
154 |
Q |
| |
|
|||| || ||| |||| |||||||| |
|
|
| T |
22338957 |
gtttttggctttagccaatttatgtag |
22338983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 35901 - 35597
Alignment:
| Q |
21 |
tgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggtt |
120 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||| ||| |||| || || ||||||||| | |||||||| ||||| ||| |||| ||||| |
|
|
| T |
35901 |
tgagacgcaactatcgagggtttcatcctgctgaggatgaactatacaatcttcagcgtttctgccttcgatgtcgtcttgatagtgagcttcggtggtt |
35802 |
T |
|
| Q |
121 |
cctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatttcttttgtaa |
220 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| | ||||||||||||| |||||| | ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
35801 |
tctcgacctttttggctttggccaacttatgtaggtcattccatcgaagaaaaatccttttagaattttctaatttccttttgtagcatttcttttgtaa |
35702 |
T |
|
| Q |
221 |
cggtttaccttacgctcttttagagctcattttgaaact-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatcttttc |
319 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||| || | ||| |||| | |||||||||||| ||| ||||||||||| ||| ||| || ||||||| |
|
|
| T |
35701 |
tggtttattttgcgctc-tttagagcccattttggaattcctttttgtacaacgcccattagttggccttatgaaatgctacgttggaacttttcttttc |
35603 |
T |
|
| Q |
320 |
gaatta |
325 |
Q |
| |
|
|||||| |
|
|
| T |
35602 |
gaatta |
35597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 337
Target Start/End: Complemental strand, 21515488 - 21515172
Alignment:
| Q |
28 |
caactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcctcgac |
127 |
Q |
| |
|
|||||||||||| | |||||||| ||| |||||| || ||||||| | || |||||| | |||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
21515488 |
caactatcgaggatttcatcctgttgaggatgaattgtacaatctccagcatttttgccttcgatgtcgtctcgatagcgagataagatggtttctcgac |
21515389 |
T |
|
| Q |
128 |
cttttcgggtttggccagattatgtagggccttccatcgaa--gaacctc-ccttttgaagttttct----agtttctgtttatagcatttcttttgtaa |
220 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||||||| ||| | ||||| ||| |||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
21515388 |
ctttttggctttggccaacttatgtaggatattccatcgaattgaaaaactcctttagaatttttctttcaagtttct-tttgtagcatttcttttgtaa |
21515290 |
T |
|
| Q |
221 |
cggtttaccttacgctcttttagagctcattttgaaact--ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatctttt |
318 |
Q |
| |
|
|||||| || ||||| || |||||||||||||| | ||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
21515289 |
tggtttattttgcgctccttgcgagctcattttgaagatcctttcatgtaaaccgcccattagttggccttgtgaaatgctatgtttgaattt-tctttt |
21515191 |
T |
|
| Q |
319 |
cgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
21515190 |
cgaattactctcgtatgat |
21515172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 337
Target Start/End: Original strand, 122042 - 122359
Alignment:
| Q |
28 |
caactatcgagggtatcatcctgctgaagatgaacaatatgatctccaacgcttctgccttaggtgtcgtctggatagcgagattcgatggttcctcgac |
127 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||| || ||||||| | || |||||| | |||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
122042 |
caactatcgaggatttcatcctgctgaggatgaattgtacaatctccagcatttttgccttcgatgtcgtctcgatagcgagataagatggtttctcgac |
122141 |
T |
|
| Q |
128 |
cttttcgggtttggccagattatgtagggccttccatcg-----aagaacctcccttttgaagttttct----agtttctgtttatagcatttcttttgt |
218 |
Q |
| |
|
||||| | |||||||| ||||||||| | |||||||| || || ||| ||| || |||||| |||||| ||| ||||||||| ||||| |
|
|
| T |
122142 |
ctttttagctttggccaatttatgtaggacattccatcggatggaaaaaactctcttg-gagtttttcttttaagtttcgttttgtagcatttcgtttgt |
122240 |
T |
|
| Q |
219 |
aacggtttaccttacgctcttttagagctcattttgaaact--ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatctt |
316 |
Q |
| |
|
|| |||||| || |||||||| |||| ||||||||| | ||| ||||| || |||||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
122241 |
aatggtttattttgcgctctttc-gagcccattttgaagatcctttcatgtaagccacccattagttggccttatgaaatgctatgtttgaattt-tctt |
122338 |
T |
|
| Q |
317 |
ttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
122339 |
ttcgaattactcttgtatgat |
122359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 19367 - 19321
Alignment:
| Q |
290 |
atgaaatgctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
19367 |
atgaaatgctatgtttaaattt-tcttttcgaattactcttgcatgat |
19321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 68796 - 68753
Alignment:
| Q |
293 |
aaatgctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
68796 |
aaatgctatgtttaaattt-tcttttcgaattactcttgcatgat |
68753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 77974 - 77931
Alignment:
| Q |
293 |
aaatgctatgtttgaatttatcttttcgaattactcttgtatgat |
337 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
77974 |
aaatgctatgtttaaattt-tcttttcgaattactcttgcatgat |
77931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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