View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_15 (Length: 321)
Name: NF6820_low_15
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 34899313 - 34899608
Alignment:
| Q |
8 |
gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat |
107 |
Q |
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| T |
34899313 |
gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat |
34899412 |
T |
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| Q |
108 |
cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcaaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899413 |
cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcgaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg |
34899512 |
T |
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| Q |
208 |
acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899513 |
acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatac |
34899608 |
T |
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