View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_16 (Length: 304)
Name: NF6820_low_16
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 26627692 - 26627415
Alignment:
| Q |
4 |
gagtttggtgtttgcagccatattgctttcaataggtagtaatttgtactgagcaattagtttgattaaattgcttttatacagtaatagcatttaattg |
103 |
Q |
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| T |
26627692 |
gagtttgatgtttgcagccatattgctttcaataggtagtaatttgtactgagcaattagtttgattaaattgcttttatacagtaatagcatttaattg |
26627593 |
T |
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| Q |
104 |
cttttattcactatgcagtcatccacggtacaagtgaatatgtccatgaattatttcttataactttacaaagcaatacgcagttaaagcttttaattgc |
203 |
Q |
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| T |
26627592 |
cttttatttcctatgcagtcatccacggtacaagtgaatatgtccatgaattatttcttttaactttacaaagcaatacgcagttaaagcttttaattgc |
26627493 |
T |
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| Q |
204 |
tgcaattaataggaattactaccaataaaagcacaatggtcatttacattnnnnnnnttctataaggagttgtcttct |
281 |
Q |
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| T |
26627492 |
tgcaattaataggaattactaccaataaaagcacaatggtcatttacattaaaaaatttctataaggagttgtcttct |
26627415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 50941320 - 50941167
Alignment:
| Q |
96 |
tttaattgcttttattcactatgcagtcatccacggtacaagtgaatatgtccatgaattatttcttataactttacaaagcaatacgcagttaaagctt |
195 |
Q |
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| T |
50941320 |
tttaattgcttttattcactatgcagcaatccacggtacaagtgactatgtccatgaattatttcctataattttacaaagcaatacgcatttaaggcgt |
50941221 |
T |
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| Q |
196 |
ttaattgctgcaattaataggaattactaccaataaaagcacaatggtcattta |
249 |
Q |
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| T |
50941220 |
ataatcgctgcaattaataggaattaatacaaataaaaacacaatggtcattta |
50941167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 50941538 - 50941429
Alignment:
| Q |
143 |
atgtccatgaattatttcttataactttacaaagcaatacgcagttaaagcttttaattgctgcaattaataggaattactaccaataaaagcacaatgg |
242 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||| |
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| T |
50941538 |
atgtccatgaattatttcctataattttacaaagcaatacgcagttaaggcttataattgctggtattaataggaattaatacaaataaaagcacaatgg |
50941439 |
T |
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| Q |
243 |
tcatttacat |
252 |
Q |
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| |||||||| |
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| T |
50941438 |
ttatttacat |
50941429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 50941109 - 50941057
Alignment:
| Q |
197 |
taattgctgcaattaataggaattactaccaataaaagcacaatggtcattta |
249 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
50941109 |
taattgctgcaattaataggaattaatataaataaaagcacaatggtcattta |
50941057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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