View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_17 (Length: 286)
Name: NF6820_low_17
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_17 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 40841915 - 40841782
Alignment:
| Q |
153 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841915 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
40841816 |
T |
|
| Q |
253 |
acctctttgttcgaagaatatttatcatcttgga |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40841815 |
acctctttgttcgaagaatatttatcatcttgga |
40841782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 41958833 - 41958700
Alignment:
| Q |
153 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
252 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41958833 |
tattttctatgttcacgaaaattattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
41958734 |
T |
|
| Q |
253 |
acctctttgttcgaagaatatttatcatcttgga |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41958733 |
acctctttgttcgaagaatatttatcatcttgga |
41958700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 41959028 - 41958877
Alignment:
| Q |
1 |
cagaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
41959028 |
cagaggccaattaatgttcctcatcaattctctaccaagtcttcctttgttcaattacaattttgattacag--------tattcaattacctgtctcat |
41958937 |
T |
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| Q |
101 |
tatagttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
160 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41958936 |
tataattatgatcaacatctccttaatttcctcctctttttccctcgacccctattttct |
41958877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 40842213 - 40842107
Alignment:
| Q |
2 |
agaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcatt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842213 |
agaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcatt |
40842114 |
T |
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| Q |
102 |
atagtta |
108 |
Q |
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||||||| |
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| T |
40842113 |
atagtta |
40842107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 40842013 - 40841959
Alignment:
| Q |
106 |
ttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
160 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40842013 |
ttataatcaacatctccttaatttcctcctctttttccctcgacccctattttct |
40841959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 9992896 - 9993047
Alignment:
| Q |
1 |
cagaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
9992896 |
cagaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattacag--------tattcaattacttgtctcat |
9992987 |
T |
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| Q |
101 |
tatagttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
160 |
Q |
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|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9992988 |
tataattataatcaacatctccttaatttcctcctctttttccctcgacccctattttct |
9993047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 29587313 - 29587446
Alignment:
| Q |
153 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
29587313 |
tattttctatgttcacgaaagttattttctgccgtgagcaaccactagaaatcatgccactccctcacattcataccaaccccttatgttgtaatagtaa |
29587412 |
T |
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| Q |
253 |
acctctttgttcgaagaatatttatcatcttgga |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29587413 |
acctctttgttcgaagaatatttatcatcttgga |
29587446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 29587119 - 29587269
Alignment:
| Q |
1 |
cagaggccaattaatgttccttatcaattctctaccaagtcttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
29587119 |
cagaggccaattaatgttccttatcaattctctac-aagtcttcctttgttcaattacaattttgattacaa--------tattcaattacttgtctcat |
29587209 |
T |
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| Q |
101 |
tatagttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
160 |
Q |
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|||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29587210 |
tataattatgatcaacttctccttaatttcctcctctttttccctcgacccctattttct |
29587269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 9993078 - 9993163
Alignment:
| Q |
201 |
aaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaaacctctttgttcgaagaatatttatcatcttgga |
286 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9993078 |
aaatcacgccactccctcacattcataacaaccccttgtgttctgatagtaaacctctttgttcgaagaatatttatcatcttgga |
9993163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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