View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6820_low_20 (Length: 245)
Name: NF6820_low_20
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_20 |
 | |
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| [»] chr5 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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|
| [»] scaffold0081 (1 HSPs) |
| |
|
| [»] scaffold0253 (2 HSPs) |
| | |
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| [»] scaffold0925 (1 HSPs) |
| | |
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| [»] scaffold0116 (3 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 21185550 - 21185315
Alignment:
| Q |
10 |
atgaactactaataagtttagaacgatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactact |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21185550 |
atgaactactattaagtttagaacgatattggagctgctttcgacggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactact |
21185451 |
T |
|
| Q |
110 |
aataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21185450 |
aataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgactaaataactctacttgtgagagttaatttctcgatgatgtggtaatt |
21185351 |
T |
|
| Q |
210 |
tctagcgatcaagtacatgtcaaaggacatcgactt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21185350 |
tctagcgatcaagtacatgtcaaaggacatcgactt |
21185315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 21629583 - 21629372
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
21629583 |
gatattggagctgctttcaacggaaacgatattgcaaccactttcgaagaatccgaaggtaaggggaattactactaataaattttaaagattttgcata |
21629484 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
21629483 |
agttatgtgcttaagtgattatatgtgagtcaataactctacttgtgagagttaatttctcgatgacgtggtaatttctagcgatcaagtacatatcaaa |
21629384 |
T |
|
| Q |
234 |
ggacatcgactt |
245 |
Q |
| |
|
|||||| |||| |
|
|
| T |
21629383 |
tgacatcaactt |
21629372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 9688188 - 9688092
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgca |
131 |
Q |
| |
|
|||||||||| |||||||| | |||||||||| |||| | ||| ||||| | ||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
9688188 |
gatattggagttgctttcgacataaacgatatttcaacaattttcaaagaactcaaaggtaaagg-aattaccactaataagttttaaagattttgca |
9688092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 10232254 - 10232465
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10232254 |
gatattggagctgctttcgacggaaacaatattgcaaccacttgcgaagaatccgaaggtaaggggaattactactaataaattttaaagattttgcata |
10232353 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10232354 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctcgatgatgtggtaatttctagcgatcaagtacatgtcaaa |
10232453 |
T |
|
| Q |
234 |
ggacatcgactt |
245 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10232454 |
ggacatcgactt |
10232465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 1776 - 1568
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1776 |
gatattggagctgctttcgatggaaacgatattccaac---tttcgaagaatccgaaggtaaggagaattactactaatatgttttaaagattttgcata |
1680 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaa |
233 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1679 |
agttatgtgcttaagtgattatatctgagtaaataactctacttgtgagagttaatttctcgatgatgtggtaatttctagagatcaagtacatgtcaaa |
1580 |
T |
|
| Q |
234 |
ggacatcgactt |
245 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1579 |
ggacatcgactt |
1568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: scaffold0253
Description:
Target: scaffold0253; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 7997 - 7789
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
7997 |
gatattggagctgctttcgatggaaacgatattgcaacaactttcgaagaatcggaaggtaaggagaattactaataatatgttttaaagatttttcata |
7898 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
7897 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctcgatgatgtggtaatttctagagattaagtacatgtcaaa |
7798 |
T |
|
| Q |
234 |
ggacatcga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
7797 |
ggacatcga |
7789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 17422 - 17214
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
17422 |
gatattggagctgctttcgatggaaacgatattgcaacaactttcgaagaatcggaaggtaaggagaattactaataatatgttttaaagatttttcata |
17323 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17322 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctcgatgatgtggtaatttctagagattaagtacatgtcaaa |
17223 |
T |
|
| Q |
234 |
ggacatcga |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
17222 |
ggacatcga |
17214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 88 - 269
Alignment:
| Q |
61 |
gatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtg |
160 |
Q |
| |
|
|||||| |||| || ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88 |
gatattccaacaacgtttgaagaaactgaaggtgaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtg |
187 |
T |
|
| Q |
161 |
agtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaaggacatcga |
242 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
188 |
agtaaataactctacttgtaagagttaatttctcgatgatgtggtaatttctagcgatcaagtatatgtcaaaggacatcga |
269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 22389413 - 22389232
Alignment:
| Q |
61 |
gatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtg |
160 |
Q |
| |
|
|||||| |||| || ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22389413 |
gatattccaacaacgtttgaagaaactgaaggtgaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtg |
22389314 |
T |
|
| Q |
161 |
agtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaaggacatcga |
242 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22389313 |
agtaaataactctacttgtaagagttaatttctcgatgatgtggtaatttctagcgatcaagtatatgtcaaaggacatcga |
22389232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 15392412 - 15392326
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagtttta |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15392412 |
gatattggagctgctttcgacggaaacgatattgcaactactttcgaagaatccgaaggtaaggggaattactactaataaatttta |
15392326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 7374968 - 7374888
Alignment:
| Q |
89 |
aaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataa |
169 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
7374968 |
aaggtaagtagaatcactactaacaagttttaaagattttgtttaagttatgcgattaattgattatatgtgagtaaataa |
7374888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 245
Target Start/End: Original strand, 32367 - 32553
Alignment:
| Q |
59 |
acgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatg |
158 |
Q |
| |
|
|||||||| |||| || |||||| || | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32367 |
acgatattccaacaacgtttgaaaaaactgaaggtaaggggaattactactaataagttttaaagattttgtataagttatgtgcttaagtgattatatg |
32466 |
T |
|
| Q |
159 |
tgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaaggacatcgactt |
245 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467 |
tgagtaactaattctacttgtgaaagttaatttctcgatgatgtggtaatttctagcgatcaagtacatgtcaaaggacatcgactt |
32553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 41847 - 41939
Alignment:
| Q |
153 |
tatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaaggacatcgactt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847 |
tatatgtgagtaaataactctacttgtgagagttaatttctcgatgatgtggcaatttctagcgatcaagtacatgtcaaaggacatcgactt |
41939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 41716 - 41808
Alignment:
| Q |
59 |
acgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtga |
151 |
Q |
| |
|
|||||||| |||| || ||||||||| | |||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41716 |
acgatattccaacaacgtttgaagaaactgaagataagggaaattactactaataaattttaaagattttgcataagttatgtgcttaagtga |
41808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 19241621 - 19241465
Alignment:
| Q |
34 |
gatattggagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcata |
133 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| |||| ||||| ||| || || |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
19241621 |
gatatcggagctgatttcgatggaaacgatattccaacaactttcgaaaaacccaaaggtaaggggaattactactaataaatgttaaagattttgcata |
19241522 |
T |
|
| Q |
134 |
agttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatt |
190 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
19241521 |
agttatgtgcttaattgattatatgtgattaaataactctatttgtgagagttaatt |
19241465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 19241457 - 19241429
Alignment:
| Q |
217 |
atcaagtacatgtcaaaggacatcgactt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19241457 |
atcaagtacatgtcaaaggacatcgactt |
19241429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 394818 - 394711
Alignment:
| Q |
138 |
atgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatttctctatgatgtggtaatttctagcgatcaagtacatgtcaaaggac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
394818 |
atgtgcttaagtgattatatgtgagtaaataactctacttatgagagttaatttctcgatgatgtggtaatttctagcaatcaaatgtatgtcaaaggac |
394719 |
T |
|
| Q |
238 |
atcgactt |
245 |
Q |
| |
|
|| ||||| |
|
|
| T |
394718 |
attgactt |
394711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 396796 - 396717
Alignment:
| Q |
62 |
atattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatgtg |
142 |
Q |
| |
|
||||| |||| || ||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
396796 |
atattccaacaacgtttgaagaaactgaagataaggggaattactactaataagttttaaaga-tttgcataagttatgtg |
396717 |
T |
|
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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 18617474 - 18617621
Alignment:
| Q |
41 |
gagctgctttcggcggaaacgatattgcaaccacttttgaagaatccgaaggtaaggggaattactactaataagttttaaagattttgcataagttatg |
140 |
Q |
| |
|
||||| |||| | |||||| |||||| |||| ||||| | |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617474 |
gagcttcttttgacggaaatgatattccaacaactttcggagaacccaaaggtaaagggaattactactaataagttttaaagattttgcataagttata |
18617573 |
T |
|
| Q |
141 |
tgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatt |
190 |
Q |
| |
|
|||| || || | ||||||||||||||||| || |||||||||||||| |
|
|
| T |
18617574 |
tgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt |
18617621 |
T |
|
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