View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_25 (Length: 238)
Name: NF6820_low_25
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 49155891 - 49155994
Alignment:
| Q |
9 |
gacatcattattcatccaattgatagcaggatgcagacaaccaatagctcataacactaaatacatttcttccaataattataaagcatcaaactcagca |
108 |
Q |
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| T |
49155891 |
gacatcattattcatccaattgatagcaggatgcagacaaccaatagctcataacactaaatccatttcttccaataattataaagcatcaaactcagca |
49155990 |
T |
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| Q |
109 |
tcca |
112 |
Q |
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|||| |
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| T |
49155991 |
tcca |
49155994 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 49156030 - 49156118
Alignment:
| Q |
150 |
tcaagagaatcaaatcttaatgaattacggaaatacataatgaggaaaaacacatatagatccatgaaacgcaacttaaaattcaaacc |
238 |
Q |
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| T |
49156030 |
tcaagagaatcaaatcttaatgaattacgtaattacataatgaggaaaaacacatctagatccatgaaacgcaacttaaaattcaaacc |
49156118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 39266032 - 39266089
Alignment:
| Q |
47 |
aaccaatagctcataacactaaatacatttcttccaataattataaagcatcaaactc |
104 |
Q |
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| T |
39266032 |
aacctatagttcataacactaaattcatctcttccaacaattataaagcatcaaactc |
39266089 |
T |
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