View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6820_low_26 (Length: 235)
Name: NF6820_low_26
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_26 |
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| [»] scaffold0116 (1 HSPs) |
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| [»] scaffold0925 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21185102 - 21184882
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttct-tnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttt |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
21185102 |
tgattcgacgcgataatttataatgttaatcgtgattaaaaacttctctaaaaaaagaaatgatctaaaagagatagt-----ctcacctcattaatttt |
21185008 |
T |
|
| Q |
100 |
atggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21185007 |
atggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagt |
21184908 |
T |
|
| Q |
200 |
atatatagttatactgtacgtacgtg |
225 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
21184907 |
atatatagttataccgtacgtacgtg |
21184882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32767 - 32988
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttcttnnnnnnn--gaaatgatctaaaagagatagttgcatctcacctcattaattt |
98 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
32767 |
tgattcgacgtgataatttataatgttaatcgtgattaaaaacttctctaaaaaaaagaaatgatctaagagagatagttgtatctcacctcattaattt |
32866 |
T |
|
| Q |
99 |
tatggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
32867 |
tatggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactatgatcactaacttagtacatagacatag |
32966 |
T |
|
| Q |
199 |
tatatatagttatactgtacgt |
220 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
32967 |
tatatatagttatactgtacgt |
32988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 486 - 701
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttct-tnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttt |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
486 |
tgattcgacgcgataatttataatgttaatcatgattaaaaacttctctaaaaaaagaaatgatctaagagagatagttgtatctcacctcattaatttt |
585 |
T |
|
| Q |
100 |
atggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagt |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
586 |
atggtatcaacttaataacaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactatgatcactaacttagtacatagacatagt |
685 |
T |
|
| Q |
200 |
atatatagttatactg |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
686 |
atatatagttatactg |
701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 22389015 - 22388800
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttct-tnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttt |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
22389015 |
tgattcgacgcgataatttataatgttaatcatgattaaaaacttctctaaaaaaagaaatgatctaagagagatagttgtatctcacctcattaatttt |
22388916 |
T |
|
| Q |
100 |
atggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagt |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
22388915 |
atggtatcaacttaataacaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactatgatcactaacttagtacatagacatagt |
22388816 |
T |
|
| Q |
200 |
atatatagttatactg |
215 |
Q |
| |
|
|||||||||||||||| |
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| T |
22388815 |
atatatagttatactg |
22388800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 394499 - 394281
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttcttnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
394499 |
tgattcgacgcgataatttataatgttaatcctgattaaaaacttctctaaaaaa-aagtgatctaagagagatagttgtatctcacctcattaatttta |
394401 |
T |
|
| Q |
101 |
tggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
394400 |
tggtatcaacttaataagaccttacttataggcatgttgtaaaggaaagaaacttaagaatgccaaactatgatcactaacttagtacatagacatagta |
394301 |
T |
|
| Q |
201 |
tatatagttatactgtacgt |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
394300 |
tatatagttatactgtacgt |
394281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10232679 - 10232884
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttct-tnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttt |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
10232679 |
tgattcgacgcgataatttataatgttaatcatgattaaaaacttctctataaaaagaaatgatctaagagagatagttgtatcccacctcattaatttt |
10232778 |
T |
|
| Q |
100 |
atggtatcaacttaataagaccttactcataggtatgttgtaaaggaaagaaacttaagaatgccaaactataatcactaacttagtacatagacatagt |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
10232779 |
atggtatcaact---------------cataggtatgttgtaaaggaaagaaacttaagaatgccaaactatgatcactaacttagtacgtagacatagt |
10232863 |
T |
|
| Q |
200 |
atatatagttatactgtacgt |
220 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
10232864 |
atatatagttatattgtacgt |
10232884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 19241193 - 19241068
Alignment:
| Q |
1 |
tgatttgacgcgataatttataatgttaatcgtgattaaaaacttcttnnnnnnngaaatgatctaaaagagatagttgcatctcacctcattaatttta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||| ||||| ||||| ||||||| | |||||||||| |
|
|
| T |
19241193 |
tgatttgacgcgataatttataatattaatcgtgattaaaaacttctcttaaaaagaaataatttaagagagagagttgtatctcacgttattaatttta |
19241094 |
T |
|
| Q |
101 |
tggtatcaacttaataagaccttact |
126 |
Q |
| |
|
|||||||||| |||||| |||||||| |
|
|
| T |
19241093 |
tggtatcaacctaataaaaccttact |
19241068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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