View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6820_low_27 (Length: 228)

Name: NF6820_low_27
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6820_low_27
NF6820_low_27
[»] chr7 (10 HSPs)
chr7 (1-228)||(5312487-5312735)
chr7 (2-58)||(12358655-12358711)
chr7 (1-72)||(1074618-1074689)
chr7 (1-72)||(18496730-18496801)
chr7 (1-72)||(29544685-29544756)
chr7 (1-72)||(21545705-21545776)
chr7 (2-72)||(20470688-20470758)
chr7 (3-62)||(14649663-14649722)
chr7 (1-72)||(20017119-20017189)
chr7 (1-72)||(23125066-23125137)
[»] chr3 (8 HSPs)
chr3 (1-61)||(19219100-19219160)
chr3 (9-61)||(11475020-11475072)
chr3 (1-72)||(16970627-16970698)
chr3 (1-59)||(13911423-13911480)
chr3 (17-61)||(10341968-10342012)
chr3 (1-72)||(19263782-19263856)
chr3 (1-61)||(23908160-23908220)
chr3 (1-61)||(26418885-26418945)
[»] chr4 (6 HSPs)
chr4 (1-72)||(5676365-5676436)
chr4 (1-72)||(7024097-7024168)
chr4 (7-72)||(33519201-33519266)
chr4 (1-72)||(31859779-31859850)
chr4 (28-72)||(34864174-34864218)
chr4 (2-72)||(27302944-27303013)
[»] chr5 (8 HSPs)
chr5 (1-71)||(11274209-11274279)
chr5 (1-72)||(24841919-24841989)
chr5 (1-71)||(30072281-30072351)
chr5 (9-73)||(7742747-7742811)
chr5 (28-72)||(16634239-16634283)
chr5 (1-72)||(26329948-26330018)
chr5 (17-59)||(20694821-20694863)
chr5 (1-62)||(26070639-26070700)
[»] chr8 (11 HSPs)
chr8 (78-166)||(27097551-27097639)
chr8 (7-72)||(28291979-28292044)
chr8 (28-72)||(5570018-5570062)
chr8 (1-61)||(13583409-13583469)
chr8 (1-72)||(16052155-16052226)
chr8 (7-72)||(6888071-6888136)
chr8 (1-60)||(11437585-11437644)
chr8 (18-72)||(13081813-13081867)
chr8 (1-58)||(28859131-28859188)
chr8 (1-61)||(24696747-24696807)
chr8 (32-72)||(27097680-27097720)
[»] chr6 (6 HSPs)
chr6 (2-61)||(26499736-26499795)
chr6 (6-70)||(24618053-24618117)
chr6 (98-161)||(17198575-17198638)
chr6 (1-58)||(30355482-30355539)
chr6 (1-61)||(33638394-33638454)
chr6 (28-72)||(17860327-17860371)
[»] chr1 (14 HSPs)
chr1 (1-72)||(26854198-26854269)
chr1 (2-72)||(11769872-11769942)
chr1 (1-73)||(18300880-18300952)
chr1 (1-72)||(25373911-25373982)
chr1 (9-72)||(25494367-25494430)
chr1 (1-71)||(25727788-25727858)
chr1 (1-71)||(25736196-25736266)
chr1 (2-72)||(26102223-26102293)
chr1 (8-72)||(21548820-21548884)
chr1 (2-72)||(19257684-19257752)
chr1 (1-72)||(30675650-30675720)
chr1 (1-72)||(50047340-50047411)
chr1 (1-72)||(52271123-52271194)
chr1 (2-62)||(27461069-27461129)
[»] chr2 (6 HSPs)
chr2 (1-62)||(17152319-17152380)
chr2 (28-72)||(18236181-18236225)
chr2 (2-72)||(21505017-21505087)
chr2 (2-72)||(31262163-31262233)
chr2 (18-72)||(31274138-31274192)
chr2 (7-72)||(18818873-18818938)
[»] scaffold0171 (2 HSPs)
scaffold0171 (1-61)||(21563-21623)
scaffold0171 (1-73)||(6361-6432)
[»] scaffold0386 (1 HSPs)
scaffold0386 (3-71)||(11678-11746)
[»] scaffold0188 (1 HSPs)
scaffold0188 (2-72)||(26833-26903)
[»] scaffold0282 (1 HSPs)
scaffold0282 (3-72)||(22492-22560)
[»] scaffold0011 (1 HSPs)
scaffold0011 (28-72)||(228065-228109)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5312735 - 5312487
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaaagggatcaaaaaagggatgaaaatgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5312735 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaaagggatcaaaaaagggatgaaaatgcaa 5312636  T
Q  101 aattcgcattgaaggcactgcctcatgcgccc---------------------ctgcgcatgagacaacattccttgatgccccatgcgcctcacttcat 179  Q
    ||||||||||||||||||||| ||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||    
T  5312635 aattcgcattgaaggcactgcttcatgcgcccctatgcatgggccatgcgccgctgcgcatgagacaacattccttgatgccccatgcgcctcacttcat 5312536  T
Q  180 gcgccccacacttggttgacagacaggaggtgacttttgcttgttttcc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5312535 gcgccccacacttggttgacagacaggaggtgacttttgcttgttttcc 5312487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12358711 - 12358655
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaata 58  Q
    |||||||||||||| ||||||| || ||||||||||||||| |||||||||||||||    
T  12358711 gatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1074618 - 1074689
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||||||||  |||||| |  ||||||||||| ||| || ||||||||||||||||||||||||||    
T  1074618 ggatcaaggatatgaaaattgaagaccaatggttcttaaaaggttgttgaagacaatacaagatgaagaaaa 1074689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18496730 - 18496801
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| ||||||| |  ||||||||||||||  || ||||||| ||||||||||||||||||    
T  18496730 ggatcaaggatatgaagattgaagaataatggttcttagaatgttgttgaagaaaatacaagatgaagaaaa 18496801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29544685 - 29544756
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||| ||||||| ||||||| || |||| |||||||||| ||||||||||||||||||  |||||||||    
T  29544685 ggatcaaagatatgaagattgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaa 29544756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21545776 - 21545705
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| ||||||| || ||||||||||||||  | ||||||||||||| ||  |||||||||    
T  21545776 ggatcaaggatatgaagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaa 21545705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 20470758 - 20470688
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||| |||  ||||||  | ||||||||||||||| || ||||||||||||||| ||||||||||    
T  20470758 gatcaaggatgtgaatattgaagttcaatggttcttagaaggttcttgaagacaatacaaaatgaagaaaa 20470688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 14649663 - 14649722
Alignment:
Q  3 atcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaag 62  Q
    |||||||||||||  | |||| || ||||||| ||||||| |||||||||||||||||||    
T  14649663 atcaaggatatgaataatgaagatcaatggttattagaaggtttttgaagacaatacaag 14649722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20017119 - 20017189
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||| ||| |||||| |||||||| | ||||||||||||||| || |||||||||||||||  |||||||||    
T  20017119 ggattaagcatatgaagattgaac-tcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaa 20017189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23125066 - 23125137
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||||| || ||||||||||||  |||||||||    
T  23125066 ggatcgaggatatgaagattgaagttcaatggttcttataagattcttaaagacaatacaaagtgaagaaaa 23125137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19219160 - 19219100
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||||    
T  19219160 ggatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaa 19219100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 11475020 - 11475072
Alignment:
Q  9 gatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  11475020 gatatgaggattcaagataaatggttcttagaagatatttgaagacaatacaa 11475072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16970627 - 16970698
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| | ||||| |  || |||||||||||| |||||||||| ||||||||||||||||||    
T  16970627 ggatcaaggatatgaagtttgaagaccaacggttcttagaaggtttttgaagaaaatacaagatgaagaaaa 16970698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13911423 - 13911480
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatac 59  Q
    ||||||||||||||| |||| ||  |||||||||||||||||| |||| ||||||||||    
T  13911423 ggatcaaggatatgaagattaaat-taaatggttcttagaagaattttcaagacaatac 13911480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10341968 - 10342012
Alignment:
Q  17 gattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||| || | ||||||||||||| ||||||||||||||||||    
T  10341968 gattgaagatcagtggttcttagaaggtttttgaagacaatacaa 10342012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19263856 - 19263782
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaag---atttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| ||||||| || |||||||| ||||||    ||||| ||||||||||||  |||||||||    
T  19263856 ggatcaaggatatgaagattgaagatcaatggttcatagaaggtttttttttaagacaatacaaagtgaagaaaa 19263782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23908220 - 23908160
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    |||||||| |||||| |||| || || ||||||| ||||||  ||||||||||||||||||    
T  23908220 ggatcaagaatatgaagatttaagatcaatggtttttagaaagtttttgaagacaatacaa 23908160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26418885 - 26418945
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||||||||||| |||| || ||  |||||||||||||| ||||| |||| |||||||    
T  26418885 ggatcaaggatatgaagattaaagattgatggttcttagaaggtttttaaagaaaatacaa 26418945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5676365 - 5676436
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||| | | ||||| | ||||| |||||||||| |||||||||||||||||||||||||||||    
T  5676365 ggatcaaggatattaagtttgaatacaaatgattcttagaaggtttttgaagacaatacaagatgaagaaaa 5676436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7024168 - 7024097
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||| ||||||| ||||||| |  |||||||||||||||||| ||||||| ||||||||||||||||||    
T  7024168 ggatcaaagatatgaagattgaagaccaatggttcttagaagattcttgaagataatacaagatgaagaaaa 7024097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33519201 - 33519266
Alignment:
Q  7 aggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||| ||||||| || ||| ||||||||||| | ||||||||||||||||| |||||||||    
T  33519201 aggatatgacgattgaagatcaatcgttcttagaaggtctttgaagacaatacaagttgaagaaaa 33519266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31859850 - 31859779
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||| |||||||||  |||||| || ||||||||||||||| | ||||||||||||||||  |||||||||    
T  31859850 ggatcgaggatatgaatattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaa 31859779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34864218 - 34864174
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||    
T  34864218 aatggttcttagaaggtttttgtagacaatacaaaatgaagaaaa 34864174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 27302944 - 27303013
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||  ||||||||| || |||||||||||| |||||||||||| || ||  |||||||||    
T  27302944 gatcaaggatatgaa-attgaacattaagggttcttagaaggtttttgaagacattataaagtgaagaaaa 27303013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11274279 - 11274209
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 71  Q
    ||||||||||||||| ||||||| |  ||||||||||||||| | ||||||||||||||||||||| ||||    
T  11274279 ggatcaaggatatgaagattgaagaccaatggttcttagaaggtctttgaagacaatacaagatgatgaaa 11274209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24841919 - 24841989
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||||||| ||||||||  | |||||||||||||||  |||||||||||| |||| ||||||||||    
T  24841919 ggatcaaggatatgtggattgaag-tcaatggttcttagaaggattttgaagacaacacaaaatgaagaaaa 24841989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30072281 - 30072351
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 71  Q
    ||||||| ||||||| ||||||| || ||||||||||| ||| ||||| ||||||||||||  ||||||||    
T  30072281 ggatcaaagatatgaagattgaagattaatggttcttaaaaggtttttaaagacaatacaaagtgaagaaa 30072351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 7742811 - 7742747
Alignment:
Q  9 gatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaaa 73  Q
    ||||||| || |||| || ||||||||||||||| | ||||||||||||||||  ||||||||||    
T  7742811 gatatgaagactgaagatcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaaa 7742747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 16634239 - 16634283
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||    
T  16634239 aatggttcttagaaggtttttgaagaaaatacaagatgaaaaaaa 16634283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26330018 - 26329948
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| |||||||  | |||||| |||||||| ||||| ||||||||||||  |||||||||    
T  26330018 ggatcaaggatatgaagattgaag-tcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaa 26329948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 20694821 - 20694863
Alignment:
Q  17 gattgaacataaatggttcttagaagatttttgaagacaatac 59  Q
    ||||||| |||||||||||||||||| | ||||||||||||||    
T  20694821 gattgaagataaatggttcttagaaggtatttgaagacaatac 20694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26070639 - 26070700
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaag 62  Q
    ||||||||||||||| ||||||| ||  ||||||| || ||| |||||||||||||| ||||    
T  26070639 ggatcaaggatatgaagattgaagatctatggttcgtataaggtttttgaagacaatgcaag 26070700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 27097639 - 27097551
Alignment:
Q  78 tcaaaaaagggatgaaaat-gcaaaattcgcattgaaggcactgcctcatgcgcccctgcgcatgagacaacattccttgatgccccatg 166  Q
    ||||||||| ||||||||  |||||||||||| |  |||||||||||||||| ||| ||||||||||||||||||||||  |||||||||    
T  27097639 tcaaaaaagagatgaaaaccgcaaaattcgcactagaggcactgcctcatgcaccc-tgcgcatgagacaacattcctttctgccccatg 27097551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 28292044 - 28291979
Alignment:
Q  7 aggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||| ||||||| || ||||||||||||||| | |||||||||||||||| ||||||||||    
T  28292044 aggatatgaagattgaagattaatggttcttagaaggtctttgaagacaatacaaaatgaagaaaa 28291979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 5570062 - 5570018
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  5570062 aatggttcttagaagctttttaaagacaatacaagatgaagaaaa 5570018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13583469 - 13583409
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||| ||||||||| |||||||  | ||||||||||||||||| ||||||||||||||||    
T  13583469 ggatcgaggatatgatgattgaagttcaatggttcttagaagatatttgaagacaatacaa 13583409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16052226 - 16052155
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||| |||||||||| |||| || |  |||| |||||||||| |||||||||||||||||| ||||||||||    
T  16052226 ggataaaggatatgaagattaaagaccaatgattcttagaaggtttttgaagacaatacaaaatgaagaaaa 16052155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 6888136 - 6888071
Alignment:
Q  7 aggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||| ||||||| || ||||||||||| ||  | ||||||||||||||||| |||||||||    
T  6888136 aggatatgaagattgaagatcaatggttcttaaaatgtctttgaagacaatacaagttgaagaaaa 6888071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11437585 - 11437644
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaataca 60  Q
    |||||||||||||||  ||||||  | ||||||||||||||||  |||||||||||||||    
T  11437585 ggatcaaggatatgaaaattgaagttcaatggttcttagaagacatttgaagacaataca 11437644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 13081867 - 13081813
Alignment:
Q  18 attgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||| || || |||||||||||| || ||||||||||||||| ||||||||||    
T  13081867 attgaagatcaagggttcttagaaggttgttgaagacaatacaaaatgaagaaaa 13081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28859188 - 28859131
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaata 58  Q
    ||||||||||||| | |||| || || ||||||||||||| | |||||||||||||||    
T  28859188 ggatcaaggatatcaagattaaagatcaatggttcttagatggtttttgaagacaata 28859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24696747 - 24696807
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||||||||||| ||||||| |  | | ||||||||||| |||||||||| |||||||    
T  24696747 ggatcaaggatatgaagattgaagaccacttgttcttagaaggtttttgaagaaaatacaa 24696807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27097720 - 27097680
Alignment:
Q  32 gttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||| | ||||||||||||||||| |||||||||    
T  27097720 gttcttagaaggtctttgaagacaatacaagttgaagaaaa 27097680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 26499795 - 26499736
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    |||| ||||||||| ||||||| || ||||||||||||||| ||||||||||||||||||    
T  26499795 gatcgaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaa 26499736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 24618053 - 24618117
Alignment:
Q  6 aaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaa 70  Q
    |||||||||| ||||||| || |||| |||||||||||| ||| ||||||||||||| |||||||    
T  24618053 aaggatatgaagattgaagatcaatgattcttagaagatctttaaagacaatacaagttgaagaa 24618117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 17198638 - 17198575
Alignment:
Q  98 caaaattcgcattgaaggcactgcctcatgcgcccctgcgcatgagacaacattccttgatgcc 161  Q
    ||||||| |||||| ||||||||||||||| ||||||| |||||||||| ||||| ||| ||||    
T  17198638 caaaatttgcattggaggcactgcctcatgtgcccctgtgcatgagacatcattcattgctgcc 17198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30355482 - 30355539
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaata 58  Q
    ||||| ||||||||| ||||||| || ||| ||||||||||| |||||||||||||||    
T  30355482 ggatcgaggatatgaagattgaagatcaatcgttcttagaaggtttttgaagacaata 30355539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33638454 - 33638394
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||||||||||| ||||||| || ||||||||||| ||| | |||||||| |||||||    
T  33638454 ggatcaaggatatgaagattgaagatcaatggttcttataaggtctttgaagataatacaa 33638394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 17860371 - 17860327
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| |||||| |||||||||||  |||||||||    
T  17860371 aatggttcttagaaggtttttgtagacaatacaaagtgaagaaaa 17860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26854269 - 26854198
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||| ||||||| |||||||  | ||||||||||||||||| ||||||||||||||||  |||||||||    
T  26854269 ggatcaatgatatgaagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaa 26854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 11769942 - 11769872
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||| ||||||| ||||||| |  ||||||||||||||| ||||||||||||||||||  |||||||||    
T  11769942 gatcaaagatatgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaa 11769872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18300952 - 18300880
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaaa 73  Q
    ||||||||||||||| |||| || |  ||||||||||||||| |||||||||||||||||   ||||||||||    
T  18300952 ggatcaaggatatgaagattaaataccaatggttcttagaaggtttttgaagacaatacagagtgaagaaaaa 18300880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25373911 - 25373982
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||| ||||||||| |||| || |  ||||||||||||||| || || |||||||||||||||||||||||    
T  25373911 ggatccaggatatgaagattaaagaccaatggttcttagaaggttgtttaagacaatacaagatgaagaaaa 25373982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 25494430 - 25494367
Alignment:
Q  9 gatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||| ||||||| |  ||||||||||||||| ||||||||||||||||||  |||||||||    
T  25494430 gatatgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaa 25494367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25727858 - 25727788
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 71  Q
    |||| |||||||||| ||||||| || |||||||||| |||| |||||||||||||| |||  ||||||||    
T  25727858 ggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaa 25727788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25736266 - 25736196
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 71  Q
    |||| |||||||||| ||||||| || |||||||||| |||| |||||||||||||| |||  ||||||||    
T  25736266 ggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaa 25736196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26102223 - 26102293
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||||||| || |||| || |||| || ||||||| ||||||||||||||||||| ||| |||||    
T  26102223 gatcaaggatatgaagaatgaagatcaatgatttttagaaggtttttgaagacaatacaagttgaggaaaa 26102293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 21548820 - 21548884
Alignment:
Q  8 ggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||| |||||||  ||||||||||||||||||  |||||||| |||||||| |||| ||||    
T  21548820 ggatatgaagattgaagctaaatggttcttagaagacatttgaagataatacaagttgaaaaaaa 21548884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 19257752 - 19257684
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||| ||||||||| |||||||||| ||  ||||||||||| | ||||||||||||||||  |||||||||    
T  19257752 gatcgaggatatgaagattgaacatcaa--gttcttagaaggtctttgaagacaatacaaagtgaagaaaa 19257684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30675650 - 30675720
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||| || ||| ||||||| || ||||||||||||||| |||||||||| |||||||  |||||||||    
T  30675650 ggatcaagaatgtgaagattgaa-atcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaa 30675720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 50047340 - 50047411
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||| |||||  |||||| || |||||| |||| ||| || ||||||||||||||| ||||||||||    
T  50047340 ggatcaagggtatgaatattgaagatcaatggtacttaaaaggttattgaagacaatacaaaatgaagaaaa 50047411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 52271194 - 52271123
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||| ||||||||| |||||||  | |||||| |||||||| | ||||||||||||||||  |||||||||    
T  52271194 ggatcgaggatatgaagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaa 52271123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 27461129 - 27461069
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaag 62  Q
    |||| ||||||||| |  |||| || ||||||||||| ||| |||||||||||||||||||    
T  27461129 gatcgaggatatgaagtatgaagatcaatggttcttaaaaggtttttgaagacaatacaag 27461069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17152319 - 17152380
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaag 62  Q
    ||||||||||||||| || |||| || ||||||||||||||| |||||||||| ||||||||    
T  17152319 ggatcaaggatatgaagaatgaatatgaatggttcttagaaggtttttgaagataatacaag 17152380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 18236225 - 18236181
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  18236225 aatggttcttagaaggttgttgaagacaatacaagatgaagaaaa 18236181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 21505087 - 21505017
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||| ||| | ||||| |  ||||||||| ||||| ||||||||||||||||||| |||||||||    
T  21505087 gatcaaggatgtgaagtttgaagaccaatggttctgagaaggtttttgaagacaatacaagttgaagaaaa 21505017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 31262163 - 31262233
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||| ||||||||| ||||||| || |||||||||||| || | ||||||||||||| ||| |||||||||    
T  31262163 gatcgaggatatgaagattgaagattaatggttcttagtaggtctttgaagacaatataagttgaagaaaa 31262233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 31274138 - 31274192
Alignment:
Q  18 attgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||    
T  31274138 attgaagattaatggttcttagaaggtctttgaagacaatataagttgaagaaaa 31274192  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 18818873 - 18818938
Alignment:
Q  7 aggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    |||||||||  | |||| || ||||||||||||||| | ||||||||||||||||  |||||||||    
T  18818873 aggatatgaaaactgaagattaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaa 18818938  T

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Target: scaffold0171 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21563 - 21623
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 61  Q
    ||||||| ||||||| ||||||| || ||||||||||||||| ||||| ||||||||||||    
T  21563 ggatcaatgatatgaagattgaagatcaatggttcttagaaggtttttaaagacaatacaa 21623  T

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Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6361 - 6432
Alignment:
Q  1 ggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaaa 73  Q
    |||||||||||||||  |||||| |  |||||||| ||||||||||||||||| |||||||  ||||||||||    
T  6361 ggatcaaggatatgaa-attgaagaccaatggttcctagaagatttttgaagaaaatacaaagtgaagaaaaa 6432  T

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Target: scaffold0386 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 11746 - 11678
Alignment:
Q  3 atcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 71  Q
    ||||||||||| | || |||| |||||| ||||||||||| ||||||||| |||| |||||||| ||||    
T  11746 atcaaggatattaagaatgaatataaatagttcttagaaggtttttgaagtcaatgcaagatgacgaaa 11678  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 26903 - 26833
Alignment:
Q  2 gatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||  ||||||  | ||||||||||||||  || |||||||||||||||  |||||||||    
T  26903 gatcaaggatatgaaaattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaa 26833  T

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Target: scaffold0282 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 22560 - 22492
Alignment:
Q  3 atcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||| || ||||  | |||||||| |||||| ||||| ||||||||||||| |||||||||    
T  22560 atcaaggatatgaagaatgaag-tcaatggttcatagaaggttttttaagacaatacaaggtgaagaaaa 22492  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 228109 - 228065
Alignment:
Q  28 aatggttcttagaagatttttgaagacaatacaagatgaagaaaa 72  Q
    ||||||||||||||| | ||||||||||||||||  |||||||||    
T  228109 aatggttcttagaaggtatttgaagacaatacaaagtgaagaaaa 228065  T

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