View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6820_low_28 (Length: 223)

Name: NF6820_low_28
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6820_low_28
NF6820_low_28
[»] chr7 (18 HSPs)
chr7 (1-223)||(5312277-5312499)
chr7 (9-182)||(5636653-5636813)
chr7 (1-107)||(24596494-24596600)
chr7 (5-87)||(9801072-9801154)
chr7 (110-183)||(3268523-3268596)
chr7 (1-107)||(4091986-4092091)
chr7 (9-87)||(9552676-9552754)
chr7 (9-87)||(9760630-9760708)
chr7 (110-217)||(4829239-4829347)
chr7 (9-102)||(22334791-22334884)
chr7 (1-100)||(20017501-20017597)
chr7 (110-186)||(21545447-21545523)
chr7 (110-177)||(3400277-3400344)
chr7 (1-36)||(7777591-7777626)
chr7 (9-51)||(4829378-4829420)
chr7 (11-49)||(17880451-17880489)
chr7 (110-223)||(24596591-24596705)
chr7 (1-38)||(21545354-21545391)
[»] chr2 (20 HSPs)
chr2 (1-206)||(18235810-18236015)
chr2 (1-107)||(14921587-14921691)
chr2 (110-168)||(39732119-39732177)
chr2 (10-102)||(9504430-9504520)
chr2 (10-102)||(9515796-9515886)
chr2 (110-186)||(24047777-24047853)
chr2 (111-186)||(17862832-17862907)
chr2 (1-107)||(17884063-17884168)
chr2 (37-107)||(27917557-27917627)
chr2 (1-194)||(18819115-18819295)
chr2 (112-167)||(21848066-21848121)
chr2 (110-184)||(15454096-15454169)
chr2 (110-176)||(31262413-31262479)
chr2 (1-49)||(27416759-27416807)
chr2 (122-169)||(12363574-12363621)
chr2 (109-174)||(13802107-13802172)
chr2 (112-177)||(17414764-17414828)
chr2 (23-91)||(22511401-22511470)
chr2 (1-38)||(25460499-25460536)
chr2 (1-42)||(30999344-30999385)
[»] chr4 (22 HSPs)
chr4 (1-223)||(29437827-29438038)
chr4 (1-204)||(19602200-19602392)
chr4 (110-223)||(23353994-23354107)
chr4 (110-223)||(7023823-7023936)
chr4 (111-210)||(22120082-22120182)
chr4 (9-107)||(13066241-13066340)
chr4 (110-177)||(26160266-26160333)
chr4 (1-102)||(4733219-4733319)
chr4 (109-177)||(31859476-31859545)
chr4 (1-89)||(5676720-5676807)
chr4 (110-165)||(12028484-12028539)
chr4 (114-220)||(21077680-21077786)
chr4 (110-173)||(33519488-33519551)
chr4 (1-49)||(10577026-10577074)
chr4 (10-90)||(18444733-18444812)
chr4 (11-87)||(26188283-26188358)
chr4 (3-90)||(33519559-33519645)
chr4 (109-151)||(10079756-10079798)
chr4 (36-94)||(17184165-17184223)
chr4 (20-102)||(26160329-26160410)
chr4 (110-166)||(22344121-22344176)
chr4 (114-166)||(34666248-34666300)
[»] chr8 (21 HSPs)
chr8 (1-170)||(14184382-14184553)
chr8 (1-107)||(30850552-30850657)
chr8 (10-107)||(11437909-11438006)
chr8 (1-220)||(18771340-18771548)
chr8 (1-95)||(24927354-24927448)
chr8 (29-185)||(30544172-30544319)
chr8 (18-102)||(29292369-29292453)
chr8 (1-100)||(13583111-13583210)
chr8 (1-100)||(24094676-24094772)
chr8 (5-44)||(15213261-15213300)
chr8 (114-177)||(24927455-24927517)
chr8 (111-174)||(28074945-28075008)
chr8 (1-102)||(23893615-23893713)
chr8 (120-177)||(6887810-6887866)
chr8 (10-107)||(16051807-16051903)
chr8 (109-177)||(5569765-5569832)
chr8 (9-41)||(22892747-22892779)
chr8 (1-49)||(24120827-24120874)
chr8 (116-168)||(27085170-27085222)
chr8 (9-41)||(28260047-28260079)
chr8 (110-162)||(29292279-29292331)
[»] chr6 (18 HSPs)
chr6 (1-215)||(15382087-15382303)
chr6 (1-223)||(15375830-15376052)
chr6 (1-107)||(16528162-16528267)
chr6 (1-174)||(22262835-22262995)
chr6 (10-93)||(13830414-13830496)
chr6 (1-219)||(15318464-15318683)
chr6 (1-219)||(15349113-15349332)
chr6 (10-107)||(26499362-26499458)
chr6 (1-219)||(15369110-15369328)
chr6 (1-41)||(30235867-30235907)
chr6 (110-177)||(32930065-32930132)
chr6 (109-159)||(10976662-10976712)
chr6 (116-177)||(17198407-17198468)
chr6 (116-175)||(12971952-12972011)
chr6 (10-64)||(28178541-28178594)
chr6 (1-100)||(9396094-9396198)
chr6 (10-51)||(19670121-19670162)
chr6 (13-49)||(12971867-12971903)
[»] chr1 (21 HSPs)
chr1 (1-90)||(25778263-25778352)
chr1 (1-90)||(21549176-21549265)
chr1 (1-220)||(52270720-52270935)
chr1 (1-100)||(50047605-50047703)
chr1 (11-100)||(25665296-25665385)
chr1 (1-64)||(34533183-34533246)
chr1 (1-90)||(25731004-25731093)
chr1 (109-177)||(27460471-27460539)
chr1 (1-49)||(30675994-30676042)
chr1 (9-107)||(15298378-15298475)
chr1 (146-223)||(15298502-15298579)
chr1 (110-172)||(26853916-26853978)
chr1 (1-102)||(31314061-31314161)
chr1 (1-49)||(23506344-23506392)
chr1 (109-177)||(34533083-34533151)
chr1 (1-107)||(23223889-23223992)
chr1 (114-177)||(25126901-25126964)
chr1 (147-204)||(14745070-14745128)
chr1 (1-49)||(11769500-11769548)
chr1 (9-49)||(11984727-11984767)
chr1 (1-49)||(14744944-14744992)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-186)||(8229-8401)
scaffold0386 (1-177)||(11259-11422)
[»] chr5 (19 HSPs)
chr5 (110-220)||(23157380-23157492)
chr5 (10-177)||(18178592-18178746)
chr5 (1-90)||(22930492-22930580)
chr5 (9-100)||(19763398-19763488)
chr5 (9-107)||(18281718-18281816)
chr5 (1-171)||(20695088-20695245)
chr5 (114-177)||(17695051-17695114)
chr5 (1-100)||(25594152-25594250)
chr5 (1-100)||(16622137-16622235)
chr5 (11-76)||(22643454-22643519)
chr5 (110-223)||(24131036-24131148)
chr5 (1-49)||(17381503-17381551)
chr5 (114-177)||(7742484-7742547)
chr5 (110-223)||(25368043-25368158)
chr5 (1-43)||(18451732-18451774)
chr5 (110-151)||(22755442-22755483)
chr5 (114-194)||(18452420-18452500)
chr5 (10-102)||(20084012-20084103)
chr5 (109-165)||(24846600-24846656)
[»] chr3 (15 HSPs)
chr3 (110-196)||(11475290-11475376)
chr3 (4-101)||(18474719-18474816)
chr3 (1-220)||(26298186-26298394)
chr3 (9-101)||(19542598-19542690)
chr3 (9-177)||(10342208-10342364)
chr3 (1-48)||(22488367-22488414)
chr3 (10-107)||(21828709-21828805)
chr3 (4-49)||(14280791-14280836)
chr3 (29-107)||(19285607-19285684)
chr3 (1-49)||(8401903-8401951)
chr3 (110-177)||(33578209-33578276)
chr3 (118-186)||(16970890-16970958)
chr3 (16-48)||(19218708-19218740)
chr3 (1-61)||(26419305-26419365)
chr3 (1-41)||(27415694-27415734)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-49)||(227697-227745)
[»] scaffold0190 (1 HSPs)
scaffold0190 (114-166)||(11265-11317)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-44)||(37558-37601)
[»] scaffold0362 (1 HSPs)
scaffold0362 (1-42)||(8232-8273)
[»] scaffold0337 (2 HSPs)
scaffold0337 (109-170)||(3603-3664)
scaffold0337 (21-49)||(3714-3742)
[»] scaffold0065 (2 HSPs)
scaffold0065 (110-174)||(12731-12796)
scaffold0065 (21-49)||(12847-12875)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5312277 - 5312499
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5312277 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgactcttgccttgtaccactagcttt 5312376  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccacta 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5312377 ctcaatgcttttcggaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccacta 5312476  T
Q  201 aaaacaacttggaaaacaagcaa 223  Q
    |||||||||||||||||||||||    
T  5312477 aaaacaacttggaaaacaagcaa 5312499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 5636813 - 5636653
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatgc 108  Q
    |||||| ||||||||||||||||||||||||| |||||||| | | ||||||| ||  | ||| |||||| ||||||||||| |||||||||||          
T  5636813 gaaaaaaataccctagagagaacaagaggaggttggagatcatctgccttgaagctt-tgatgcttgaccattgccttgtactactagctttct------ 5636721  T
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaa 182  Q
          |||||||||||| |||||||||| |||||| |||||||| ||||||||||||| | ||||||| ||||    
T  5636720 ------gaatgaataaaagtgtgtgcaagggtctctatttatagtgcatcattacttagtgattaagagatgaa 5636653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24596494 - 24596600
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    |||||||  |||||||||| |||||||||||||||||| ||| |||||| | | ||||||| ||||| ||| ||||||||||||||||||||  ||||||    
T  24596494 aaacaatataaaaacatacactagagagaacaagaggatgatagagatcatctgccttgaagctcctgatgcttgacccttgccttgtaccatcagcttt 24596593  T
Q  101 ctcaatg 107  Q
    || ||||    
T  24596594 ctgaatg 24596600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 9801154 - 9801072
Alignment:
Q  5 aattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttg 87  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | | |||| || ||| | ||| |||||||||||||||    
T  9801154 aattgaaaaacacaccctagagagaacaagaggaggatggagatcctcttccttaaagctcttgatgcttgacccttgccttg 9801072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 3268523 - 3268596
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaa 183  Q
    |||||||| |||||||| ||||||||||||||| | | |||||||||||||||||||||| ||||||| |||||    
T  3268523 tttctgaacgaataaaagtgtgtgcaagagtctatatatatagtacatcattacttagggtttaagagatgaaa 3268596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4091986 - 4092091
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||| | | ||||| |||  || ||| ||||||||||||||  ||| ||||||||    
T  4091986 aaacaatagaaaaacatacc-tagagagaacaagaggaagatggagatcctctgccttggaacctctgatgcttgacccttgccttcaaccgctagcttt 4092084  T
Q  101 ctcaatg 107  Q
    || ||||    
T  4092085 ctgaatg 4092091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 9552754 - 9552676
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttg 87  Q
    |||||| ||||||||||||||||||||||| |||||||||| | | ||||||| ||| | ||| |||||||||||||||    
T  9552754 gaaaaatataccctagagagaacaagaggatgatggagatcctcttccttgaagctcttgatgcttgacccttgccttg 9552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 9760708 - 9760630
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttg 87  Q
    |||||||||||| |||||||||||| ||||||||||||||| | | ||||||| ||| | ||| |||||||||| ||||    
T  9760708 gaaaaacataccttagagagaacaataggaggatggagatcctcttccttgaagctcttgatggttgacccttgtcttg 9760630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 4829347 - 4829239
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccactaaaaacaac 208  Q
    ||||| |||||||||||   |||||| |||||||| || |||||  || | ||||||||||||||||| ||||||||   | |||||||| |||||||||    
T  4829347 tttctaaatgaataaaataatgtgcatgagtctctattcatagtggatgactacttaggggttaagagagtgaaaatagagtttttccaccaaaaacaac 4829248  T
Q  209 ttggaaaac 217  Q
    |||||||||    
T  4829247 ttggaaaac 4829239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 22334791 - 22334884
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactcctt-atgtttgacccttgccttgtaccactagctttct 102  Q
    |||||||||| | |||| ||| ||||||||| ||||||||| | | ||| |||| | ||| ||| ||||||||||||||||||||||||||||||    
T  22334791 gaaaaacatatcttagaaagaccaagaggagaatggagatcctctgcct-gaaagttcttgatgcttgacccttgccttgtaccactagctttct 22334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20017597 - 20017501
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||| || |||||||||||||||| |||| |||||   | ||||| ||||  | ||||||||||||||||||| ||||||| ||||    
T  20017597 aaacaatagaaaaacatagccaagagagaacaagaggaagatgaagatc--ctgccttggaact-ttaatgtttgacccttgccttgaaccactaacttt 20017501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 21545447 - 21545523
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatt 186  Q
    |||||||| |||||| |||||||| | | |||||| ||||||| | || |||||||||||||||||||  |||||||    
T  21545447 tttctgaaagaataataatgtgtgtacgggtctctatttatagaaaatgattacttaggggttaagagaagaaaatt 21545523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 3400344 - 3400277
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||| ||||||||| |||| |||||||||||||| ||||||| | || | ||||||||| |||||||    
T  3400344 tttctaaatgaataagaatgcgtgcaagagtctctatttatagcatatgactacttagggtttaagag 3400277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7777591 - 7777626
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagag 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7777591 aaacaatagaaaaacataccctagagagaacaagag 7777626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 4829420 - 4829378
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatctt 51  Q
    |||||||||| | |||||||||||||||||||||| |||||||    
T  4829420 gaaaaacatatcttagagagaacaagaggaggatgaagatctt 4829378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 17880451 - 17880489
Alignment:
Q  11 aaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  17880451 aaaacataccatagagagaacaataggaggatggagatc 17880489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 24596591 - 24596705
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaaga-ggtgaaaatttgggttttccactaaaaacaac 208  Q
    |||||||||||||||||  ||||||||  |||||| |||||| | ||| ||||  || |||||||||  ||||||||  | ||||||||| |||||   |    
T  24596591 tttctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaaaataggagttttccaccaaaaatggc 24596690  T
Q  209 ttggaaaacaagcaa 223  Q
    |||||||||||||||    
T  24596691 ttggaaaacaagcaa 24596705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21545354 - 21545391
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagagga 38  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21545354 aaacaatataaaaacataccctagagagaacaagagga 21545391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 18235810 - 18236015
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||| ||||||||| |||| ||||||||||||| | | |||| || ||| | ||| ||||||||| ||||||||| ||||||||    
T  18235810 aaacaatagaaaaacataccatagagagaataagaagaggatggagatcctcttccttaaatctcttgatgcttgacccttaccttgtaccgctagcttt 18235909  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccacta 200  Q
    ||  |||||||||| ||||||||||| ||||| ||||||||||| | |||| | ||||||||||||||||||||||| | |||||| || ||||||||||    
T  18235910 ctgtatgcttttctaaatgaataaaagtgtgtacaagagtctctatctataatgcatcattacttaggggttaagagataaaaattaggattttccacta 18236009  T
Q  201 aaaaca 206  Q
    | ||||    
T  18236010 ataaca 18236015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 14921587 - 14921691
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||||||||||||||||| || ||||||  |||| | | ||||||||||| | ||| |||||| ||||||| |||| ||||| ||    
T  14921587 aaacaattgaaaaacataccctagagagaacaatagaaggatg--gatcctctgccttgaaactcgtgatgattgacctttgccttttaccgctagcctt 14921684  T
Q  101 ctcaatg 107  Q
    || ||||    
T  14921685 ctgaatg 14921691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 39732177 - 39732119
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttagg 168  Q
    ||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||    
T  39732177 tttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcatcattacttagg 39732119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 9504520 - 9504430
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttct 102  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||||  ||| || ||||||||||| ||||||| ||| ||| ||||||    
T  9504520 aaaaacataccctagagagaacaagaggaggatggagatcctcttccttg-gact-ctgatgtttgacccctgccttgaaccgctatctttct 9504430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 9515886 - 9515796
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttct 102  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||||  ||| || ||||||||||| ||||||| ||| ||| ||||||    
T  9515886 aaaaacataccctagagagaacaagaggaggatggagatcctcttccttg-gact-ctgatgtttgacccctgccttgaaccgctatctttct 9515796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 24047853 - 24047777
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatt 186  Q
    ||||| ||||||||| | ||||||||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||    
T  24047853 tttctcaatgaataagagtgtgtgcaagaatctctatttatagtgcatcattacttagggtttaagagatgagaatt 24047777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 17862907 - 17862832
Alignment:
Q  111 ttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatt 186  Q
    |||||||||||||||| ||||||||| ||||| | |||||||| |||||||||||| || ||||||  ||||||||    
T  17862907 ttctgaatgaataaaagtgtgtgcaaaagtctatatttatagtgcatcattacttaaggtttaagaaatgaaaatt 17862832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17884063 - 17884168
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||||| || ||||||||| ||  || ||| | | ||||||| ||| | ||| |||||||||||||||||| |||||||||    
T  17884063 aaacaatagaaaaacataccctagaaaggacaagaggatgacagaaatcctctgccttgaatctc-tgatgcttgacccttgccttgtactactagcttt 17884161  T
Q  101 ctcaatg 107  Q
    || ||||    
T  17884162 ctaaatg 17884168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 27917557 - 27917627
Alignment:
Q  37 gaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||||||||||| | |||| |||| ||||| ||| ||||||||||||||||||| |||||||||| ||||    
T  27917557 gaggatggagatcctctaccatgaagctcctgatgcttgacccttgccttgtaccgctagctttctgaatg 27917627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 18819295 - 18819115
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||||| | |  || ||| ||  | |||||||||| ||||||||||||  ||||       
T  18819295 aaacaatagaaaaacataccctagtaagaacaagaggaggatagagatcctctgtctggaagct-ttgatgtttgaccattgccttgtaccgttagc--- 18819200  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggtttt 194  Q
             ||||||||| |||||||  || |||||| |||||| |||||| |||||||||||||||| ||||||||  ||||| ||| |||||    
T  18819199 ---------tttctgaataaataaaagagtttgcaagggtctctatttataatacatcattacttaggagttaagagaagaaaaattgagtttt 18819115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 21848066 - 21848121
Alignment:
Q  112 tctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttag 167  Q
    ||||||||||||||| ||||||||||||||||| |||||  || ||||||||||||    
T  21848066 tctgaatgaataaaagtgtgtgcaagagtctctatttatcctatatcattacttag 21848121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 15454096 - 15454169
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaa 184  Q
    ||||| ||||||||||  |||||||||| |||||  |||||||| ||||||||||||||| ||||||| ||||||    
T  15454096 tttctaaatgaataaag-tgtgtgcaagggtctcgatttatagttcatcattacttagggtttaagagatgaaaa 15454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 31262479 - 31262413
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaaga 176  Q
    ||||| |||||||||||  |||| |||| |||||| |||||||| |||||||||||||||| |||||    
T  31262479 tttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatcattacttaggggataaga 31262413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27416759 - 27416807
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    ||||||| ||||| ||||||  |||||||||||||||||||||||||||    
T  27416759 aaacaatagaaaagcatacctcagagagaacaagaggaggatggagatc 27416807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 12363621 - 12363574
Alignment:
Q  122 taaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggg 169  Q
    ||||| |||||||||||||||||||||||| |  ||||||||||||||    
T  12363621 taaaagtgtgtgcaagagtctctgtttatattgaatcattacttaggg 12363574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 13802172 - 13802107
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaa 174  Q
    |||||||||||||||||| | ||| ||||| ||||| ||||||||| || ||| ||||||| ||||    
T  13802172 ttttctgaatgaataaaagtctgtacaagattctctatttatagtatataattgcttagggtttaa 13802107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 17414764 - 17414828
Alignment:
Q  112 tctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||| ||||||||  ||||| |||| ||| | |||||||||||||||||||||| |||||||||    
T  17414764 tctgaaagaataaaagagtgtgtaaga-tctatatttatagtacatcattacttagaggttaagag 17414828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 22511470 - 22511401
Alignment:
Q  23 agagagaacaagaggaggatggagatcttataccttgaaactccttatg-tttgacccttgccttgtacc 91  Q
    |||| |||||||| ||||||||||||| | ||||| ||| ||||| ||| ||||||||||||||| ||||    
T  22511470 agagtgaacaagaagaggatggagatcctctacctggaagctcctgatgttttgacccttgccttatacc 22511401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25460536 - 25460499
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagagga 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  25460536 aaacaatagaaaaacatacactagagagaacaagagga 25460499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30999385 - 30999344
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggat 42  Q
    ||||||| ||||||||||||||||||||||||| || |||||    
T  30999385 aaacaatagaaaaacataccctagagagaacaaaagaaggat 30999344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29438038 - 29437827
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||||||| |||||||| | |||||||||| |   ||||||| ||| | ||| ||||||||||||||||||||||||        
T  29438038 aaacaatagaaaaacataccctagagataacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactag---- 29437943  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 199  Q
            ||||||||||||||| ||  |||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||  || ||||||||     
T  29437942 --------ttttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccacc 29437851  T
Q  200 aaaaacaacttggaaaacaagcaa 223  Q
    ||||||  ||||||||||||||||    
T  29437850 aaaaacggcttggaaaacaagcaa 29437827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 19602392 - 19602200
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||||| |||| ||||| |||| ||| || ||| | | ||||||| ||||| ||| ||| ||||||||||||||| |||||       
T  19602392 aaacaatagaaaaacataccctcgagataacaaaaggatgatagaaatcctctgccttgaagctcctgatgcttggcccttgccttgtaccgctagc--- 19602296  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 199  Q
             |||||||||||| ||||  |||| |||| |||||| |||||| | ||| ||||||| ||||||||||| ||||||||  |||||||||||     
T  19602295 ---------tttctgaatgaaaaaaagagtgtacaagggtctctatttataatgcatgattacttcggggttaagagagtgaaaataggggttttccacc 19602205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 23354107 - 23353994
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaa-aatttgggttttccactaaaaacaac 208  Q
    |||||||||||||||||  || ||| ||||||| | |||||| |||||||||||||||||||||||||  ||| |||  || ||||| ||| ||||||||    
T  23354107 tttctgaatgaataaaagagtttgcgagagtctttatttataatacatcattacttaggggttaagagaagaagaataaggtttttcaact-aaaacaac 23354009  T
Q  209 ttggaaaacaagcaa 223  Q
    ||| |||||||||||    
T  23354008 ttgaaaaacaagcaa 23353994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 7023823 - 7023936
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccactaaaaacaact 209  Q
    ||||| |||||||||||  ||||||||  |||||| ||| |||| ||||| | | |||||||| |||| ||||| || || |||||||||||||| | ||    
T  7023823 tttctcaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttaggattttccactaaaaatagct 7023922  T
Q  210 tggaaaacaagcaa 223  Q
    ||||||||||||||    
T  7023923 tggaaaacaagcaa 7023936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 22120182 - 22120082
Alignment:
Q  111 ttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtg-aaaatttgggttttccactaaaaacaact 209  Q
    |||||||||||||||  |||||||||| |||||| |||   ||||||||||||||||||||||||||  | |||| | | |||||||||| |||||||||    
T  22120182 ttctgaatgaataaatgtgtgtgcaagggtctctattttgggtacatcattacttaggggttaagagaagaaaaactagagttttccactgaaaacaact 22120083  T
Q  210 t 210  Q
    |    
T  22120082 t 22120082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 13066340 - 13066241
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactcctt-atgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||||||||||||||| ||||||| | ||||||||||||| ||| |||||||  ||||| || |||||| |||||||| |||| ||| |||||| ||||    
T  13066340 gaaaaacataccctagaaagaacaaaacgaggatggagatcctatgccttgaagatccttgatatttgactcttgccttataccgctaactttctgaatg 13066241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 26160333 - 26160266
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||||||||||||||  |||||||||||||||| |||||||  ||| |||||||| ||||||||||    
T  26160333 tttctgaatgaataaaagagtgtgcaagagtctctatttatagggcataattacttatgggttaagag 26160266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4733319 - 4733219
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||| |||| ||||||| | ||||||||||||| | | ||||||| || || | |||||||||||| ||||||| | |||||||    
T  4733319 aaacaatagaaaaacataccttagaaagaacaacaagaggatggagatcatctgccttgaagct-ctaacgtttgacccttgtcttgtactagtagcttt 4733221  T
Q  101 ct 102  Q
    ||    
T  4733220 ct 4733219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 31859476 - 31859545
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttat-agtacatcattacttaggggttaagag 177  Q
    ||||||||||||||||||  ||||||||| ||||||  |||| ||| |||||||||||||||||||||||    
T  31859476 ttttctgaatgaataaaagagtgtgcaagggtctctacttataagtgcatcattacttaggggttaagag 31859545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5676807 - 5676720
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgta 89  Q
    ||||||| |||||||||||| |||| ||||||||||||||||| | ||  | |||||||||||| || ||| ||| |||||||||||||    
T  5676807 aaacaatagaaaaacataccatagaaagaacaagaggaggatgaaaattatctaccttgaaact-ctgatgcttggcccttgccttgta 5676720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 12028484 - 12028539
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactt 165  Q
    |||||||||||||||||  |||||||||||||||| |||||||| |||| ||||||    
T  12028484 tttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcatctttactt 12028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 21077786 - 21077680
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgg-gttttccactaaaaacaacttgg 212  Q
    ||||||||||| |  |||  |||| |||||| ||||||||| ||||||||||||||||||||||  ||||||| ||  ||||||| |||||||||||||     
T  21077786 tgaatgaataagatagtggacaagggtctctatttatagtagatcattacttaggggttaagagaagaaaattgggcattttcca-taaaaacaacttga 21077688  T
Q  213 aaaacaag 220  Q
    | ||||||    
T  21077687 ataacaag 21077680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 33519551 - 33519488
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggtta 173  Q
    |||||||||||||||||  ||||||||| |||| | ||||||||| ||||||| ||||||||||    
T  33519551 tttctgaatgaataaaagagtgtgcaagggtctttatttatagtatatcattaattaggggtta 33519488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10577074 - 10577026
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||||    
T  10577074 aaacaatataaaaacataccctagagaggacaagaggaggagggagatc 10577026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 18444812 - 18444733
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    ||||||||||||||  |||||||||||||||||||||||| |   |||||||||| || ||  ||||||||| ||||||||    
T  18444812 aaaaacataccctaatgagaacaagaggaggatggagatcctccgccttgaaact-ctgattcttgaccctttccttgtac 18444733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 26188358 - 26188283
Alignment:
Q  11 aaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttg 87  Q
    ||||||||||||| ||||||||||||||||||| ||||| | | ||||| |||| || ||| ||||| |||||||||    
T  26188358 aaaacataccctatagagaacaagaggaggatgaagatcctctgccttggaact-ctgatgcttgactcttgccttg 26188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 33519645 - 33519559
Alignment:
Q  3 acaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    ||||| |||||| |||||| ||||||||||| |||| ||| || ||||| | ||||||| || || |||||||||||||||||| |||    
T  33519645 acaatagaaaaatatacccaagagagaacaaaaggatgatagatatcttttgccttgaagct-ctgatgtttgacccttgccttatac 33519559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 10079756 - 10079798
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttata 151  Q
    |||||||||||||||||| |||||||||| || ||||||||||    
T  10079756 ttttctgaatgaataaaagtgtgtgcaagcgtgtctgtttata 10079798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 17184165 - 17184223
Alignment:
Q  36 ggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccact 94  Q
    ||||||| |||||| | | ||||||| ||||| |||||||||| |||||||||||||||    
T  17184165 ggaggatagagatcctctgccttgaagctcctgatgtttgacctttgccttgtaccact 17184223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 26160410 - 26160329
Alignment:
Q  20 cctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttct 102  Q
    |||||||||||||||||||||||| ||||| | |  |||||| || |||||| | || ||||| |||||||| ||||||||||    
T  26160410 cctagagagaacaagaggaggatgtagatcatctgacttgaagct-cttatgctagatccttgtcttgtaccgctagctttct 26160329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 22344176 - 22344121
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactta 166  Q
    |||||||||||| | || ||| ||||||||||||| ||||||| |||||||||||||    
T  22344176 tttctgaatgaaaataactgtatgcaagagtctctatttatag-acatcattactta 22344121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 34666300 - 34666248
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactta 166  Q
    ||||||||| ||||||| ||||||| ||||| |||||| | ||||||||||||    
T  34666300 tgaatgaatgaaaatgtttgcaagaatctctatttataatgcatcattactta 34666248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 14184553 - 14184382
Alignment:
Q  1 aaacaattgaaaaacataccctagagaga--acaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagct 98  Q
    ||||||| ||||| |||||||||||||||  | |||||||||||||||||||| ||||||||| ||| | ||| |||||| |||||||||| |  |||||    
T  14184553 aaacaatagaaaatcataccctagagagagaataagaggaggatggagatcttctaccttgaagctcttgatgcttgaccattgccttgtagcgttagct 14184454  T
Q  99 ttctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttagggg 170  Q
    | || ||||||||||||||| ||||||| ||||||||||  ||||| ||||||| | || ||||||||||||    
T  14184453 tgcttaatgcttttctgaatcaataaaagtgtgtgcaaggttctctatttatagcagatgattacttagggg 14184382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30850552 - 30850657
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| | | |||| || || |||||||||||||||||||||||||| ||||||||    
T  30850552 aaacaatagaaaaacataccctagagagaacaataggaggatggagatcctctgccttaaatct-cttatgtttgacccttgccttgtaccgctagcttt 30850650  T
Q  101 ctcaatg 107  Q
    || ||||    
T  30850651 ctgaatg 30850657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 11438006 - 11437909
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    |||||||||||||| |||||||||||| |||||||||||| | | | ||||| ||| | ||| |||||||||||||||||| ||||||||||| ||||    
T  11438006 aaaaacataccctacagagaacaagagaaggatggagatcctctgctttgaagctcatgatgcttgacccttgccttgtactactagctttctaaatg 11437909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18771548 - 18771340
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||| |||| ||||||||||||| | ||||||||||||| | ||||||||| ||||| ||| |||||| ||||||||||               
T  18771548 aaacaatagaaaaagatactctagagagaacaaaatgaggatggagatcatctaccttgaagctcctgatgcttgaccattgccttgta----------- 18771460  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 199  Q
     || |||  ||||| |||||||||||  ||||||||| |||||| || | |||  || |||||| |||| ||||||| ||||||||  |||||||||||     
T  18771459 -tcgatggatttctaaatgaataaaagagtgtgcaagggtctctattaagagtgtatgattactgagggattaagagagtgaaaataggggttttccacc 18771361  T
Q  200 aaaaacaacttggaaaacaag 220  Q
    |||||||  ||||||||||||    
T  18771360 aaaaacatattggaaaacaag 18771340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24927354 - 24927448
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccacta 95  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| ||||| |  |||||||| |||||  ||||||||  |||||||| |||||||    
T  24927354 aaacaatagaaaaacataccctaaagagaacaaggggaggatgaagatcctccaccttgaagctcctggtgtttgacatttgccttggaccacta 24927448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 30544319 - 30544172
Alignment:
Q  29 aacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatgcttttctgaatgaataaaaat 128  Q
    ||||||||||||||| ||||| ||| ||||||| | |||  |||||||| ||||||||| |||||||||          ||||||| |||||||||||      
T  30544319 aacaagaggaggatgaagatcctatgccttgaagcgcctattgtttgactcttgccttgaaccactagc----------cttttctaaatgaataaaaga 30544230  T
Q  129 gtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaat 185  Q
    ||||||||   ||||| ||||||||  || ||||||||||||||||||| ||||||||    
T  30544229 gtgtgcaatgatctctatttatagtgtatgattacttaggggttaagagagtgaaaat 30544172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 29292453 - 29292369
Alignment:
Q  18 accctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttct 102  Q
    ||||||||||||||||||| | ||||  |||||| | ||||||| ||||| |||||||| | |||||||||||| ||| ||||||    
T  29292453 accctagagagaacaagagaatgatgctgatcttcttccttgaagctcctgatgtttgatcattgccttgtacctctaactttct 29292369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13583111 - 13583210
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||| | |||| ||||||  | |||||||| |   ||||||| ||| | ||| ||||||||||||||||||| ||||||||    
T  13583111 aaacaatggaaaaacataccctacaaagaataagagggtggtggagatcctccgccttgaagctcttgatggttgacccttgccttgtacctctagcttt 13583210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24094772 - 24094676
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| || |||||||| ||||| | |||||||||||||| |||||  | | ||||||||||  | ||||||||||||||||||| ||||||| ||||    
T  24094772 aaacaatagagaaacatactctagacaaaacaagaggaggatagagat--tctgccttgaaactt-tgatgtttgacccttgccttgaaccactaacttt 24094676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 15213261 - 15213300
Alignment:
Q  5 aattgaaaaacataccctagagagaacaagaggaggatgg 44  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  15213261 aattgaaaaacataccctagaaagaacatgaggaggatgg 15213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 24927455 - 24927517
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||||||||| | |||||||| |||||| |||||| || || |||||||||||||||||||    
T  24927455 tgaatgaataaaatt-tgtgcaagggtctctatttatattagatgattacttaggggttaagag 24927517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 28075008 - 28074945
Alignment:
Q  111 ttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaa 174  Q
    ||||||||||||||||  |||| |||  |||||| |||||||| ||| ||||||||||||||||    
T  28075008 ttctgaatgaataaaatagtgtacaaaggtctctatttatagtgcataattacttaggggttaa 28074945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23893713 - 23893615
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||| ||| ||| ||||||||||||| |||||||||||||||   | |||||||||| || ||  |||||||||||| || ||| ||||||||    
T  23893713 aaacaatagaataacctactctagagagaacaataggaggatggagatc--ctgccttgaaact-ctaattcttgacccttgccctgaaccgctagcttt 23893617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 6887810 - 6887866
Alignment:
Q  120 aataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||||| | |||||| |||||| |||||||| ||||||||||||| |||||||||    
T  6887810 aataaaaatttctgcaag-gtctctatttatagtgcatcattacttagaggttaagag 6887866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 16051807 - 16051903
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||||||| |||||||||||||| | |||||| |||||| | ||||||  |||| || ||| ||||||||| ||||| |||  ||||||||| ||||    
T  16051807 aaaaacatatcctagagagaacaaaatgaggatagagatcctctaccttagaact-ctaatggttgaccctttccttgaaccgttagctttcttaatg 16051903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 5569765 - 5569832
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||||||||||||||| |||||| ||| |||||| ||||||  | || ||||||||||| |||||||    
T  5569765 ttttctgaatgaataaaagtgtgtg-aagggtctctatttataacaaatgattacttagggtttaagag 5569832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 22892747 - 22892779
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggagga 41  Q
    |||||||||||||||||||||||||||| ||||    
T  22892747 gaaaaacataccctagagagaacaagagaagga 22892779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24120874 - 24120827
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  24120874 aaacaattaaaaaa-ataccgtagagagaacaagaggaggatagagatc 24120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 27085170 - 27085222
Alignment:
Q  116 aatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttagg 168  Q
    |||||||||||  ||||||| | |||||| |||||||||||||| ||||||||    
T  27085170 aatgaataaaagagtgtgcaggggtctctatttatagtacatcactacttagg 27085222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 28260047 - 28260079
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggagga 41  Q
    |||||||||||| ||||||||||||||||||||    
T  28260047 gaaaaacataccatagagagaacaagaggagga 28260079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 29292331 - 29292279
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcatta 162  Q
    |||||||||||||||||  ||||  |||||||||| |||||| ||||||||||    
T  29292331 tttctgaatgaataaaagagtgtataagagtctctatttataatacatcatta 29292279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15382303 - 15382087
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaa--gaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagct 98  Q
    |||||||||||||||||||||||||||| | ||  |||||||||| ||||| | | ||||||| ||| | ||| ||||||||||||||||    ||| |     
T  15382303 aaacaattgaaaaacataccctagagagtataaaagaggaggatgaagatcgtctgccttgaagctcttgatgcttgacccttgccttgtttttctatca 15382204  T
Q  99 ttctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccac 198  Q
    | ||  |  ||||| | | ||||||||  |||||||||| |||||| |||||||| || |||||| || ||||||| || | |||||| |||||||||||    
T  15382203 tgcttgacacttttattattgaataaacgtgtgtgcaagtgtctctatttatagtgcaacattacgtatgggttaaaagataaaaattagggttttccac 15382104  T
Q  199 taaaaacaacttggaaa 215  Q
    ||||| |||||||||||    
T  15382103 taaaatcaacttggaaa 15382087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15376052 - 15375830
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||| | | ||||||| ||||| ||| | ||||||| ||||||    ||| |||     
T  15376052 aaacaattgaaaaacataccctagagagaacaagttgaggattgagatcgtctgccttgaagctcctgatgatggacccttaccttgtttttctatcttg 15375953  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccacta 200  Q
    ||  |  | ||| ||| ||| |||   |||| |||||||||||| |||||||| ||||||||| || | ||||| || |||||||  ||||||| ||  |    
T  15375952 cttgacacgtttatgattgattaactgtgtgcgcaagagtctctatttatagtgcatcattacgtatgagttaaaagatgaaaataagggtttttcaaaa 15375853  T
Q  201 aaaacaacttggaaaacaagcaa 223  Q
    ||  |||||||||||| ||||||    
T  15375852 aagtcaacttggaaaagaagcaa 15375830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16528267 - 16528162
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||||| | | ||||| ||||||  ||| ||||||||| ||||| || |||||||||    
T  16528267 aaacaatacaaaaacataccctagagagaacaagaggaggatgaagatcctctgccttggaactcc-aatgcttgaccctttccttgaacaactagcttt 16528169  T
Q  101 ctcaatg 107  Q
    || ||||    
T  16528168 ctaaatg 16528162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 22262995 - 22262835
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||  |||||| || |||| |||||||| |||| | ||||||||| ||  | ||| ||||||||||||||| ||| ||||||||    
T  22262995 aaacaatagaaaaacatacattagagaaaataagaagaggatggcgatcctctaccttgaagcta-tgatgcttgacccttgccttgaaccgctagcttt 22262897  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaa 174  Q
    |||||||            ||||||| ||||||||||||||||| ||||| || ||||||||||||||| ||||    
T  22262896 ctcaatg------------aataaaagtgtgtgcaagagtctctatttatggtgcatcattacttagggtttaa 22262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 13830414 - 13830496
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccac 93  Q
    |||| |||||||||||||||||||||||||||||||||||   | ||||| |||| || |||||||||||||||||| ||||||    
T  13830414 aaaatcataccctagagagaacaagaggaggatggagatccccttccttggaact-ctaatgtttgacccttgccttataccac 13830496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15318683 - 15318464
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||  ||||| | | |||| || ||| | ||| || |||  ||||||||  |  || |||     
T  15318683 aaacaattgaaaaacataccctagagagaacaaaaggtggataaagatcatcttccttaaagctcttgatgcttcaccactgccttgtttcgatatcttg 15318584  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtg-aaaatttgggttttccact 199  Q
    ||  |  ||||||||| | ||||||| |||| |||||||||||| || ||||| ||||||||| || ||||||| || || |||||  || |||||||||    
T  15318583 cttgacacttttctgattaaataaaagtgtgcgcaagagtctctattcatagtgcatcattacgtatgggttaaaagatgaaaaataaggtttttccact 15318484  T
Q  200 aaaaacaacttggaaaacaa 219  Q
    |||| || |||| |||||||    
T  15318483 aaaatcagcttgaaaaacaa 15318464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15349332 - 15349113
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||  ||||| | | |||| || ||| | ||| || |||  || |||||  |  || |||     
T  15349332 aaacaattgaaaaacataccctagagagaacaaaaggcggataaagatcatcttccttaaagctcttgatgcttcaccactgtcttgtttcgatatcttg 15349233  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggtttt-ccact 199  Q
    ||  |  ||||||||| | ||||||| |||| | |||||||||| ||||||||| || ||||| || ||||||| || |||||| | ||||||| |||||    
T  15349232 cttgacacttttctgagtaaataaaagtgtgagtaagagtctctatttatagtatattattacgtatgggttaaaagatgaaaaatagggtttttccact 15349133  T
Q  200 aaaaacaacttggaaaacaa 219  Q
    |||| ||||||| |||||||    
T  15349132 aaaatcaacttgaaaaacaa 15349113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 26499362 - 26499458
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||||||||| |||||||||||||||||||||||||||| | | |||||||  | || ||| || ||||||||||||| || |||||||||| ||||    
T  26499362 aaaaacataccttagagagaacaagaggaggatggagatcattttccttgaagat-ctgatgcttaacccttgccttgtgcctctagctttctgaatg 26499458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15369328 - 15369110
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||  ||||| | | |||  || ||| | ||| || ||   ||||||||  |  || |||     
T  15369328 aaacaattgaaaaacatactctagagagaacaaaaggcggataaagatcattttcctcaaagctcttgatgcttcactactgccttgtttcgatatcttg 15369229  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccacta 200  Q
    ||  |  ||||||||| | ||||||| |||| |||||| ||||| |||||||| ||||||||| || ||||||| || |||||| | ||||||||| |||    
T  15369228 cttgacacttttctgattaaataaaagtgtgcgcaagaatctctatttatagtgcatcattacgtatgggttaaaagatgaaaaatagggttttccccta 15369129  T
Q  201 aaaacaacttggaaaacaa 219  Q
    ||| | ||||| |||||||    
T  15369128 aaatctacttgaaaaacaa 15369110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30235867 - 30235907
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggagga 41  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  30235867 aaacaatagaaaaacataccctagagagaacaagaggagga 30235907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 32930065 - 32930132
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| |  |||||||||||||  |||||||    
T  32930065 tttctgaatgaataaaagtgtatgcaagagtctctatttataatggatcattacttaggaattaagag 32930132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 10976662 - 10976712
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatca 159  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||| |||||    
T  10976662 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 10976712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 17198407 - 17198468
Alignment:
Q  116 aatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||||||||  || |||||| |||||| |||| | |||||||||||||||||||||||||    
T  17198407 aatgaataaaagagtatgcaagggtctctatttagaatacatcattacttaggggttaagag 17198468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 12971952 - 12972011
Alignment:
Q  116 aatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaag 175  Q
    |||||||||||  || |||||| |||||| |||||||| ||||||||| |||||||||||    
T  12971952 aatgaataaaagagtctgcaagggtctctatttatagtgcatcattacgtaggggttaag 12972011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 28178594 - 28178541
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaact 64  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| | ||||||||||    
T  28178594 aaaaacatacc-tagagagaataagaggaggatgtagatcttttgccttgaaact 28178541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9396094 - 9396198
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggagga--tggag----atcttataccttgaaactccttatgtttgacccttgccttgtaccact 94  Q
    |||||||||||||||||| |||  |||||||||||||||||   ||||    ||| | ||||||||| || || ||| ||||||||||||||||||||||    
T  9396094 aaacaattgaaaaacatatcctgaagagaacaagaggaggaggaggaggaaaatcctctaccttgaagct-ctaatgcttgacccttgccttgtaccact 9396192  T
Q  95 agcttt 100  Q
    | ||||    
T  9396193 atcttt 9396198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 19670121 - 19670162
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatctt 51  Q
    ||||||||||||||||||||||| | ||||||||||| ||||    
T  19670121 aaaaacataccctagagagaacagggggaggatggagttctt 19670162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 12971867 - 12971903
Alignment:
Q  13 aacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||| |||||||||||||||||||||| |||||    
T  12971867 aacataccatagagagaacaagaggaggatgaagatc 12971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25778352 - 25778263
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||  | | ||||||| ||||  ||||||||||||||||||||||    
T  25778352 aaacaatagaaaaacataccctagagagaacgagaggaggatggagatgctcttccttgaagctccagatgtttgacccttgccttgtac 25778263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 21549265 - 21549176
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||  |||| ||| |||||| ||| |||||||    
T  21549265 aaacaatagaaaaacataccctagagagaacaagaggaggatggagatcctctgccttgaagatcctgatgcttgaccattgacttgtac 21549176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 52270720 - 52270935
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||   ||||||||||||||||||||||| ||||| | | || |||| ||||| ||| ||| ||||||||||||||| ||||||||    
T  52270720 aaacaatagaaaaacatcatctagagagaacaagaggaggatgaagatcctttgccgtgaagctcctgatgcttggcccttgccttgtaccgctagcttt 52270819  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 199  Q
    || ||||  |    || ||  ||| | ||     |||||||||| |||||| | ||| ||||||||||||||||||| ||||||||   | ||||||||     
T  52270820 ctgaatgaataaaagattgtgtaacagtg-----aagagtctctatttatattgcatgattacttaggggttaagagagtgaaaatagagcttttccacc 52270914  T
Q  200 aaaaacaacttggaaaacaag 220  Q
    |||||||||||| ||||||||    
T  52270915 aaaaacaacttgaaaaacaag 52270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 50047703 - 50047605
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||   | ||||| |||| || ||||||||||||||||||  ||| ||||||||    
T  50047703 aaacaatataaaaacataccctagagagaacaagaggaggatggagatccccttccttggaact-ctaatgtttgacccttgccttaaaccgctagcttt 50047605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 25665296 - 25665385
Alignment:
Q  11 aaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    |||||||| |||||||||||||||||||||||||||||| | | ||||||| ||| | ||| |||||||||| |||||||  ||||||||    
T  25665296 aaaacatatcctagagagaacaagaggaggatggagatcatctgccttgaagctcatgatgcttgacccttgtcttgtactgctagcttt 25665385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34533246 - 34533183
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaact 64  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||    
T  34533246 aaacaatcgaaaaacataccctagagagaacaagaggaggatgaagatcctcttccttgaaact 34533183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25731093 - 25731004
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    |||||||  ||||||||||||||||||||||  |||||||||| ||||| | | |||| || ||||| |||||| |||||||||||||||    
T  25731093 aaacaatataaaaacataccctagagagaacgggaggaggatgaagatcctcttcctttaagctcctgatgttttacccttgccttgtac 25731004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 27460471 - 27460539
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||||| ||||||||  ||||| ||| |||||| ||||||||  ||||||||||||||||||||||    
T  27460471 ttttctgaaagaataaaagagtgtgtaagggtctctatttatagtggatcattacttaggggttaagag 27460539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30676042 - 30675994
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  30676042 aaacaatagaaaaacataccctagagagactaagaggaggatggagatc 30675994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 15298378 - 15298475
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||| |||||||||||||||||||||||||| || | ||| | | ||||| |||| || |||||||||  |||| ||||||| |||||||||| ||||    
T  15298378 gaaaagcataccctagagagaacaagaggagggtgaatatcctctgccttggaact-ctgatgtttgacaattgcgttgtaccgctagctttcttaatg 15298475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 15298502 - 15298579
Alignment:
Q  146 tttatagtacatcattacttaggggttaagaggtg-aaaatttgggttttccactaaaaacaacttggaaaacaagcaa 223  Q
    |||||| |||||||||||||||||||||||||  | ||||| ||||||||| ||  ||||||||||| |||||||||||    
T  15298502 tttataatacatcattacttaggggttaagagaagaaaaatatgggttttcaac-caaaacaacttgaaaaacaagcaa 15298579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 26853916 - 26853978
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggtt 172  Q
    |||||||||||||||||  |||| |||| |||||| ||||||||  |||||||||||||||||    
T  26853916 tttctgaatgaataaaatagtgttcaagggtctctatttatagtgtatcattacttaggggtt 26853978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31314161 - 31314061
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||| ||| |||||||||||||| | ||||||||||| | | ||||| | || || ||| ||||||||  ||||||||| ||||||||    
T  31314161 aaacaatagaaaaacaaaccatagagagaacaagatggggatggagatcctctgccttgcagct-ctgatggttgaccctaaccttgtaccgctagcttt 31314063  T
Q  101 ct 102  Q
    ||    
T  31314062 ct 31314061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23506392 - 23506344
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  23506392 aaacaatagaaaaacattctctagagagaataagaggaggatggagatc 23506344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 34533151 - 34533083
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||  | || ||||||||| | |||||||    
T  34533151 ttttctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgattacttagagtttaagag 34533083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 23223992 - 23223889
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||||||  |||||| ||||||||||| ||||| | | ||||| |||| || ||| ||||||||| || || | ||||||||||    
T  23223992 aaacaatagaaaaacatacccta--gagaactagaggaggatgaagatcctctgccttggaact-ctgatgcttgaccctttccgtgaatcactagcttt 23223896  T
Q  101 ctcaatg 107  Q
    || ||||    
T  23223895 ctgaatg 23223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 25126964 - 25126901
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    |||||||||||||| |||| ||||  ||||| |||||| ||||||| ||||| |||||||||||    
T  25126964 tgaatgaataaaaaagtgttcaaggatctctatttataatacatcactactttggggttaagag 25126901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 14745070 - 14745128
Alignment:
Q  147 ttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccactaaaaa 204  Q
    |||| |||||||||||||||||||||||||| |  |||| | |||||||||||||||||    
T  14745070 ttatggtacatcattacttaggggttaagagagaaaaaaatagggttttccactaaaaa 14745128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11769500 - 11769548
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||  ||||||| ||| ||||||||| ||||||||||||||||||    
T  11769500 aaacaatataaaaacacaccatagagagaaaaagaggaggatggagatc 11769548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 11984727 - 11984767
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  11984727 gaaaaatatatcttagagagaacaagaggaggatggagatc 11984767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14744944 - 14744992
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    ||||||| |||||||||| | |||||||||||||| ||||||| |||||    
T  14744944 aaacaatagaaaaacatatcatagagagaacaagaagaggatgcagatc 14744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8229 - 8401
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||| | ||||||| |||| || ||| ||||||||||| ||||| || ||||       
T  8229 aaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaact-ctgatgcttgacccttgcgttgtaacattagc--- 8324  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatt 186  Q
             ||||||||||||||||||||| |||||| |||||| ||||||| | || ||||||||||| | |||||  |||||||    
T  8325 ---------tttctgaatgaataaaaatgtctgcaagggtctctatttatagcatattattacttagggttaaagagaagaaaatt 8401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 11259 - 11422
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||| | ||||||| ||||  | ||| ||||||||||||||||| |  ||||       
T  11259 aaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaact-ttgatgcttgacccttgccttgtaacgttagc--- 11354  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
             ||||||||||||||||||| |||||||| |||||| ||||||| | || ||||||||||  |||||||    
T  11355 ---------tttctgaatgaataaaaatatgtgcaagggtctctatttatagcatattattacttaggatttaagag 11422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 23157380 - 23157492
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtg-aaaatttgggttttccactaaaaacaa 207  Q
    |||||||||||||||||  ||||||||| |||||| |||||| | ||| ||||||||||||||||||| ||| ||||| ||||||||||||  ||||||     
T  23157380 tttctgaatgaataaaatagtgtgcaagggtctctttttataatgcatgattacttaggggttaagagagtgaaaaatatgggttttccacctaaaacag 23157479  T
Q  208 cttggaaaacaag 220  Q
    |||||||||||||    
T  23157480 cttggaaaacaag 23157492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 18178746 - 18178592
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatgct 109  Q
    ||||| |||||||||||||||||||||||||||| ||||| |  ||||| || || || |||||||||| ||||||||||||| ||||                
T  18178746 aaaaaaataccctagagagaacaagaggaggatgaagatcctccacctttaagct-ctgatgtttgaccattgccttgtaccattagc------------ 18178660  T
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||| |||||||||||||| ||||||||| |||||| || ||| | |||||||||||||||||||||||    
T  18178659 tttttgaatgaataaaaaagtgtgcaagggtctctattgatattgcatcattacttaggggttaagag 18178592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22930580 - 22930492
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtac 90  Q
    ||||||| |||||||||| |||||||| ||||| ||||||||||||||| | |||||| || || |||||||||||||||||||||||||    
T  22930580 aaacaatagaaaaacataacctagagataacaaaaggaggatggagatcctctaccttaaagct-cttatgtttgacccttgccttgtac 22930492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 19763398 - 19763488
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||| |||||||||||||||||||| ||||| | | ||||||| ||  | ||||||||||||||||||||||||||||||||    
T  19763398 gaaaaacttacccttgagagaacaagaggaggatgaagatcctctgccttgaagctt-tgatgtttgacccttgccttgtaccactagcttt 19763488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 18281718 - 18281816
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    |||||| ||||||||||||||||||||||| ||||||| || | ||||||||| ||||| |||||||||  |||||||| ||  |||||||||| ||||    
T  18281718 gaaaaatataccctagagagaacaagaggacgatggaggtcctctaccttgaagctcctgatgtttgacgtttgccttgcactgctagctttctgaatg 18281816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 20695245 - 20695088
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||||||||||||||| |||| ||||||| |||||   | |||||||  | |  ||| |||||||||||||| |||||||||||||    
T  20695245 aaacaatagaaaaacataccctagagagaaaaagaagaggatgaagatccattgccttgaagttgcg-atgcttgacccttgccttctaccactagcttt 20695147  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggt 171  Q
    ||            |||||||| |||| || ||||||||||||| ||||||||||||||||||||| ||||    
T  20695146 ct------------gaatgaatgaaaaggtttgcaagagtctctatttatagtacatcattacttacgggt 20695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 17695051 - 17695114
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||||||||| || |||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  17695051 tgaatgaataaaagtgcgtgcaagactctctatttatagtgcatcattacttagggtttaagag 17695114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25594152 - 25594250
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| |||||||||| | |||||||||||||||||||||| ||| | | | ||||| | || || |||||| |||||||||||| ||||||||||||    
T  25594152 aaacaatagaaaaacatatcttagagagaacaagaggaggatgaagaccctcttccttggagct-ctgatgtttaacccttgccttgaaccactagcttt 25594250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16622137 - 16622235
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||| | |    |||| |||| || ||| ||||| ||||||||| ||||||||||||    
T  16622137 aaacaatagaaaaacataccctaaagagaacaagagaaggatggagaccctcagtcttggaact-ctaatgcttgactcttgccttgaaccactagcttt 16622235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22643454 - 22643519
Alignment:
Q  11 aaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttga 76  Q
    |||| ||||||||||||||||||||||| |||||| ||||| | ||||||| ||||  ||||||||    
T  22643454 aaaaaataccctagagagaacaagaggatgatggatatcttcttccttgaagctccggatgtttga 22643519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 24131148 - 24131036
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccactaaaaacaact 209  Q
    ||||| ||||| ||||  ||| || ||| |||||| |||||||| ||||||||| ||||| |||||||  || ||||||| ||||||||| |  | ||||    
T  24131148 tttctaaatgattaaaggtgtatgtaagggtctctatttatagttcatcattacatagggtttaagagacgataatttggcttttccactgatca-aact 24131050  T
Q  210 tggaaaacaagcaa 223  Q
    ||||||||||||||    
T  24131049 tggaaaacaagcaa 24131036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17381503 - 17381551
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||  ||| |||||||||||||||||||| |||||||||||||||    
T  17381503 aaacaatataaatacataccctagagagaacaaaaggaggatggagatc 17381551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 7742484 - 7742547
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||||| |||||  ||||||||| |||||| |||||| | ||||||| |||||||||||||||    
T  7742484 tgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttaggggttaagag 7742547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 25368158 - 25368043
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactta-ggggttaagag-gtgaaaatttgggttttccactaaaaacaa 207  Q
    ||||| |||||||||||  ||||||||  |||||| |||||||| ||| ||||| ||  |||||||||| ||||||||  ||||||||||| |||||       
T  25368158 tttctaaatgaataaaatagtgtgcaatggtctctatttatagtgcatgattacgtacagggttaagagagtgaaaataggggttttccaccaaaaatgg 25368059  T
Q  208 cttggaaaacaagcaa 223  Q
    |||| |||||||||||    
T  25368058 cttgaaaaacaagcaa 25368043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18451732 - 18451774
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatg 43  Q
    ||||||| |||||||||| |||||||||||||||| |||||||    
T  18451732 aaacaatagaaaaacatatcctagagagaacaagaagaggatg 18451774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 22755483 - 22755442
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttata 151  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  22755483 tttctgaatgaataaaatagtgtgcaagagtctctatttata 22755442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 18452420 - 18452500
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggtttt 194  Q
    ||||||||||| ||||||||||||||||||| |||| |  | || || ||||| || |||||||  |||||||||| ||||    
T  18452420 tgaatgaataataatgtgtgcaagagtctctatttacaacaaatgatcacttaaggtttaagagaagaaaatttggctttt 18452500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 20084103 - 20084012
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttct 102  Q
    |||||||||||||||||||||||| |||| ||||  |||||| | ||||| || | || ||| |||||| || | ||||||| ||||||||||    
T  20084103 aaaaacataccctagagagaacaacaggatgatgaggatcttcttccttg-aagttctgatgcttgaccttttctttgtacctctagctttct 20084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 24846656 - 24846600
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactt 165  Q
    |||||||||||||||||| || |||||||||| ||| |||||||   ||||||||||    
T  24846656 ttttctgaatgaataaaagtgcgtgcaagagtgtctatttataggcaatcattactt 24846600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 11475376 - 11475290
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttcc 196  Q
    |||||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||||| ||  ||||| | |||||||||    
T  11475376 tttctgaatgaataaaagagtgtgcaagagtctctatttatattacatcattacttaggggttaaaagaagaaaactagggttttcc 11475290  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 18474816 - 18474719
Alignment:
Q  4 caattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttc 101  Q
    |||| |||||| | ||||| ||||||| |||||||||||||||||  | | ||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  18474816 caatagaaaaataaaccctggagagaataagaggaggatggagatactctgccttgaaactcctgatgcttgacccttgccttgtacctctagctttc 18474719  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26298394 - 26298186
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagcttt 100  Q
    ||||||| ||| |||||||   ||||| ||||||||||||||| ||||| | | ||||||| ||| | ||| |||||||||| |||||| ||||||||||    
T  26298394 aaacaatagaataacatacttgagagacaacaagaggaggatgaagatcctcttccttgaagctcatgatgcttgacccttgacttgtagcactagcttt 26298295  T
Q  101 ctcaatgcttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 199  Q
    |||            ||| |||||||  |||||||||||||||| |||||| | ||| ||| ||||||||||||||| | ||||||  || |||| |||     
T  26298294 ctc------------aattaataaaagagtgtgcaagagtctctatttataatgcatgattccttaggggttaagagagggaaaataaggttttttcacc 26298207  T
Q  200 aaaaacaacttggaaaacaag 220  Q
    ||||||| |||||||||||||    
T  26298206 aaaaacagcttggaaaacaag 26298186  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 19542598 - 19542690
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttc 101  Q
    |||||| |||||||||||||||||||||||||||||||||  | | |||| |||||  | ||| ||||||||||||||||||| | |||||||    
T  19542598 gaaaaatataccctagagagaacaagaggaggatggagatactctgccttaaaacttataatgcttgacccttgccttgtacctcaagctttc 19542690  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 10342364 - 10342208
Alignment:
Q  9 gaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatgc 108  Q
    |||||| |||||||||||||||||||||||||||||| ||| | | ||||||||   || |||||||||||| || ||| ||||||| |               
T  10342364 gaaaaatataccctagagagaacaagaggaggatggaaatcatctgccttgaaaactctgatgtttgaccctcgctttgaaccactaac----------- 10342276  T
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
     ||||||||| ||||| ||| ||||||||||||| | ||||||||| || ||||||||||| |||||||    
T  10342275 -tttctgaattaataataatatgtgcaagagtctatatttatagtaaatgattacttagggtttaagag 10342208  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22488367 - 22488414
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagat 48  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  22488367 aaacaattgaaaaacatatcctagagagaacaagaggaggatggagat 22488414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21828709 - 21828805
Alignment:
Q  10 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    ||||| || |||||||||||||||||||| |||||||||| | | ||||||| || |||||| ||||||||||| |||| || |||||||||| ||||    
T  21828709 aaaaaaattccctagagagaacaagaggaagatggagatcctttgccttgaagct-cttatgcttgacccttgcattgtgccgctagctttctgaatg 21828805  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 14280791 - 14280836
Alignment:
Q  4 caattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  14280791 caatagaaaaacataccctagagagaacaagaggaggatgtagatc 14280836  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 19285684 - 19285607
Alignment:
Q  29 aacaagaggaggatggagatcttataccttgaaactccttatgtttgacccttgccttgtaccactagctttctcaatg 107  Q
    |||||| |||||||| ||||| | | ||||||| ||||  |||||||||||||||||||||||| ||||||||| ||||    
T  19285684 aacaagcggaggatgaagatcctctgccttgaagctccg-atgtttgacccttgccttgtaccattagctttctgaatg 19285607  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8401903 - 8401951
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    |||||||  |||||||||||||||||| ||||||||||||||| |||||    
T  8401903 aaacaatataaaaacataccctagagataacaagaggaggatgaagatc 8401951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 33578276 - 33578209
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag 177  Q
    ||||| ||||||||||| |||||||||| |||||| ||||||||  |||||||| ||  |||||||||    
T  33578276 tttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatcattacgtataggttaagag 33578209  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 16970958 - 16970890
Alignment:
Q  118 tgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatt 186  Q
    ||||||||| |||||| ||| |||||| ||||||| | || ||||||||||| |||||||  |||||||    
T  16970958 tgaataaaagtgtgtgtaagggtctctatttatagcatatgattacttagggtttaagagaagaaaatt 16970890  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 19218708 - 19218740
Alignment:
Q  16 ataccctagagagaacaagaggaggatggagat 48  Q
    |||| ||||||||||||||||||||||||||||    
T  19218708 atactctagagagaacaagaggaggatggagat 19218740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26419365 - 26419305
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaa 61  Q
    ||||||| |||||||||||||||  || ||||||||||| ||| ||||| | |||||||||    
T  26419365 aaacaatagaaaaacataccctaatgaaaacaagaggagaatgaagatcctttaccttgaa 26419305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27415734 - 27415694
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggagga 41  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  27415734 aaacaatagaaaaagataccccagagagaacaagaggagga 27415694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 227697 - 227745
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatc 49  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  227697 aaacaattgaaaaacatactctagagagaacaagaggaggatggagatc 227745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 11265 - 11317
Alignment:
Q  114 tgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattactta 166  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  11265 tgaatgaataaaaaagtgtgcaagtgtctctatttatagtacatcattactta 11317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37601 - 37558
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggatgg 44  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  37601 aaacaattgaaaaacataccctagagagaacaagtggagaatgg 37558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8273 - 8232
Alignment:
Q  1 aaacaattgaaaaacataccctagagagaacaagaggaggat 42  Q
    ||||||| |||||| ||||||||||||||||||||| |||||    
T  8273 aaacaatagaaaaaaataccctagagagaacaagagaaggat 8232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 3664 - 3603
Alignment:
Q  109 ttttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttagggg 170  Q
    |||| ||||||||||||   ||||||||| |||||| |||||||| ||| ||||||||||||    
T  3664 ttttatgaatgaataaactagtgtgcaagggtctctatttatagtgcataattacttagggg 3603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 3742 - 3714
Alignment:
Q  21 ctagagagaacaagaggaggatggagatc 49  Q
    |||||||||||||||||||||||||||||    
T  3742 ctagagagaacaagaggaggatggagatc 3714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 12796 - 12731
Alignment:
Q  110 tttctgaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattac-ttaggggttaa 174  Q
    ||||||||||||||||   ||||||||| |||||| |||||||| ||| ||||| |||||||||||    
T  12796 tttctgaatgaataaactggtgtgcaagggtctctatttatagtgcataattactttaggggttaa 12731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 12875 - 12847
Alignment:
Q  21 ctagagagaacaagaggaggatggagatc 49  Q
    |||||||||||||||||||||||||||||    
T  12875 ctagagagaacaagaggaggatggagatc 12847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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