View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_3 (Length: 559)
Name: NF6820_low_3
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 251 - 539
Target Start/End: Complemental strand, 42850161 - 42849872
Alignment:
| Q |
251 |
gtttgttggttagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
350 |
Q |
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| T |
42850161 |
gtttgttggctagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
42850062 |
T |
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| Q |
351 |
tatattttaacagaaactaaacaaa-gttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcagggg |
449 |
Q |
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| T |
42850061 |
tatattttaacagaaactaaacaaaagttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcggggg |
42849962 |
T |
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| Q |
450 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctgcgaccacaaggtatgaggggtagaagccctgaatatatttccaatc |
539 |
Q |
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| T |
42849961 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctgcgaccacaaggtatgaggggtagaagccctgaatatctttccaatc |
42849872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 42850369 - 42850162
Alignment:
| Q |
1 |
atttgtttgtgataggtttttt-gacaatgggttcagtcttcttgtgagagggcttattataaatagtgattcttatgtcatgtgtgatcactaattcat |
99 |
Q |
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| T |
42850369 |
atttgtttgtgataggtttttttgacaatgggttcagtcttcttgtgaaagggcttattataaatagtgattcttatgtcatgtgtgatcactaattcat |
42850270 |
T |
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| Q |
100 |
ggtagtaatccaattgaagtgctattagtgttccaattttccccccttttttgctctttgtattgttatctctttgagtgatgatgtgggttgtttagag |
199 |
Q |
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| T |
42850269 |
ggtagtaatccaattgaagtgctattagtgttccaattttcccccctgttttgctctttgtattgttatctctttgagcgatgatgtgggttgtttagag |
42850170 |
T |
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| Q |
200 |
ttattcat |
207 |
Q |
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|||||||| |
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| T |
42850169 |
ttattcat |
42850162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 30941558 - 30941790
Alignment:
| Q |
5 |
gtttgtgataggttttttgacaatgggttcagtcttcttgtgagagggcttattataaatagtgattctt-atgtcatgtgtgatcactaattcatggta |
103 |
Q |
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| T |
30941558 |
gtttgtgataggtttt--gacattgggttcagtcttcctgtgaaaggacattttacaaatagtgactctttatgtcatgagtgatcactacttcgtggta |
30941655 |
T |
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| Q |
104 |
gtaatccaattgaagtgctattagtgttccaattttccccccttttttgctctttgtattgttatctctttgagtgatgatgtgggttgtttagagttat |
203 |
Q |
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| T |
30941656 |
ttaatccaattgcagtgctattggtgttccaaattttcccc-ttttttgctatttgtatggttatctctttgactgatgacatgggttgcttggagttac |
30941754 |
T |
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| Q |
204 |
tcatattggattttgattaaatcttggagtttgcat |
239 |
Q |
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| T |
30941755 |
tcatattggattttgattaaatattggagtttgcat |
30941790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 30941792 - 30941887
Alignment:
| Q |
277 |
gcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtgtatattttaacagaaactaaaca |
373 |
Q |
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| T |
30941792 |
gcttgaaaattagagaagaaatgttcctaggtcactgcttgttacgggaggtgaaatatttg-caagcaatgtttatatttcaacggaagctaaaca |
30941887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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