View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_4 (Length: 503)
Name: NF6820_low_4
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 42 - 437
Target Start/End: Complemental strand, 44817966 - 44817539
Alignment:
| Q |
42 |
cttcaaatagtttagtaattagaattttatccattgagatgaatagttggagaatgcatgttcaaatcccggtccatacttaccgtaatgtttctataaa |
141 |
Q |
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| T |
44817966 |
cttcaaatagtttagtaattagaattttatccattgagatgaataattggagaatgcatgttcaaatcccggtccatgcttaccgtaatgtttctataaa |
44817867 |
T |
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| Q |
142 |
ctttattagttggtttatattgatgtt-------------------attatattcaacattaaaagtttaaatgttacaacatttatttatcttataatt |
222 |
Q |
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| T |
44817866 |
ctttattagttgatttatattgatgtttcatttaaaactagaggatattatattcaacattaaaattttaaatgttacaacatttatttatcttataatt |
44817767 |
T |
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| Q |
223 |
caatgagacattgagtcnnnnnnnnnnnnn-ttataaggaacaagtaaggtctctatcctatctatct------------tccccataaaaggcacatgg |
309 |
Q |
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| T |
44817766 |
caatgagacattgagtcaaaaagaaaaaaaattataaggaacaagtaaggtctctatcctatctatctatctatctatcttccccataaaaggcacatgg |
44817667 |
T |
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| Q |
310 |
ttaggtttggttgcaatccaatccaacaaccactttgtccaggcttgttaagtgcctgtacaaaaaaggggccctctacatgcaaacatgtgtcatctcg |
409 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817666 |
ttaggtttggttgcaatccaatccaacacccactttgtccaggcttgttaagtgacagtacaaaaaaggggccctctacatgcaaacatgtgtcatctcg |
44817567 |
T |
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| Q |
410 |
tgcttcatatatatcaatttcattttat |
437 |
Q |
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| T |
44817566 |
tgcttcatatatatcaatttcattttat |
44817539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 44817409 - 44817362
Alignment:
| Q |
432 |
ttttatgcaactttttacgtggaaatcaaaaagcaatgttgaatatat |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817409 |
ttttatgcaactttttacgtggaaatcaaaaagcaatgttgaatatat |
44817362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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