View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6820_low_7 (Length: 397)
Name: NF6820_low_7
Description: NF6820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6820_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 30239359 - 30239750
Alignment:
| Q |
6 |
acatggaaccttaagcctggtttcttgcgtttatttatacggtccaatgattttaatccttgtactcaatgataaacgcatgctcgggcgttgatcaaaa |
105 |
Q |
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| T |
30239359 |
acatggaaccttaagcctggtttcttgcgtttatttatacggtccaatgattttaatccctgtactcaatgataaacgcatgctcgggtgtcgatcaaaa |
30239458 |
T |
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| Q |
106 |
ttatggaacttcctgaggaatattggagagaaagaactctttttgagattgctagtgccgtgggaacgcccttatccattgatgagggagggtcatgcct |
205 |
Q |
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| T |
30239459 |
ttatggaacttcctgaggaatattggagagaaagaactccttttgagattgctagtgccgtgggaacgcccttatccattgatgagggagggtcatgcct |
30239558 |
T |
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| Q |
206 |
tcaatgtcgaggtaatatatgaaaagtgtccagatttttgtgataactgcaaggttattggtcaccatttatccagatgcaaagatgacaagggcaagaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30239559 |
tcaatgtcgaggtaatatatgaaaagtgtccagatttttgtcataactgcaaggttattggtcaccatttatccagatgcaaagatgacaagggcaagaa |
30239658 |
T |
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| Q |
306 |
gaaagtcctagtcaagaaggatatccaaaaattcattgaaaaaccagctcttgagaaagcaaatcctcccatggacgatactcataagggaa |
397 |
Q |
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| T |
30239659 |
gaaagtcctagtcaagaaggatatcaaaaaattcattgaaaaaccagctcttgagaaagcaaatcctcccatggacgatactcataagggaa |
30239750 |
T |
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