View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6828_low_1 (Length: 1010)
Name: NF6828_low_1
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 989
Target Start/End: Original strand, 18047674 - 18048648
Alignment:
| Q |
15 |
gacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcatccaagta |
114 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |
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|
| T |
18047674 |
gacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcatgcaagaa |
18047772 |
T |
|
| Q |
115 |
cttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaag |
214 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
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|
| T |
18047773 |
cttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggtagccttgtgttgatatttt-ttgttattttag |
18047863 |
T |
|
| Q |
215 |
aggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgac |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
18047864 |
agcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagctcaattcaataacgtcttatattcggattgac |
18047963 |
T |
|
| Q |
315 |
gttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaattcatccac |
414 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
18047964 |
gttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatttatatat--ttttccttttgaatttatctctggtttactaattcatccac |
18048061 |
T |
|
| Q |
415 |
ctgttagcctataatttcgacggactgatttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
514 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18048062 |
ctgttagcctataatttcgacaggttgatttaatgcagtaaaag--ttggctttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
18048159 |
T |
|
| Q |
515 |
gagagtttgggatttagtatttggcgaattt-acgagctctgaagttcgacaagaggcagagccataagaagtttggttgaagccaaacagttgctgtcg |
613 |
Q |
| |
|
| |||||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18048160 |
gggagtttgggatttagtatttggagaagttcaagagctctgaagttcgacaagaggcagagcagaaagaagtttggttgaagccaaacagttgctgtcg |
18048259 |
T |
|
| Q |
614 |
aagggaaagaatttgataaaaggtaataaaagaaaacacaacagcacaagagtgcttatacaactattaataacctaatctaacttataaataactagag |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18048260 |
aagggaaagaatttgataaaaggtaataaaagaaaacacaacagcacaagagtgcttatacaactattaataacctaatctaacttataaataactagag |
18048359 |
T |
|
| Q |
714 |
ctatcaaatttgccccggactcggtatgtctcgtaacttataaaatatttattttcatatgacatgaacgatttaaaagtcgttgtttatacacaaacaa |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18048360 |
ctatcaaatttgccccggactcggtatgtctcgtaacttataaaatatttattttcatatgacatgaacgatttaaaagtcgttgtttatacacaaacaa |
18048459 |
T |
|
| Q |
814 |
taagtgagttatctctgnnnnnnnnngttcaaacaccgtcattatgcacatataaacttttaaata------------atatgtatgtatggttgtatat |
901 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
18048460 |
taagtgagttatctctggttttttttgttcaaacaccgtcattatgcacatataaacttttaaataatatgtatgtatatatgtatgtatggttgtatat |
18048559 |
T |
|
| Q |
902 |
gtttatcactttaagtattttaattgttttctctagtagttgaagctcacacatttaaatttggaaaagtggtttgt-cggagttcgaa |
989 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||| ||| ||||||||||| |
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|
| T |
18048560 |
gtttatcactttaagtattttaattgttttctctagtaggtgaagctcacgcatttaaatatggagaagtggagtgtccggagttcgaa |
18048648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 673; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 989
Target Start/End: Complemental strand, 4397652 - 4396678
Alignment:
| Q |
15 |
gacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcatccaagta |
114 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |
|
|
| T |
4397652 |
gacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcatgcaagaa |
4397554 |
T |
|
| Q |
115 |
cttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaag |
214 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
|
|
| T |
4397553 |
cttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggtagccttgtgttgatatttt-ttgttattttag |
4397463 |
T |
|
| Q |
215 |
aggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgac |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4397462 |
agcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagctcaattcaataacgtcttatattcggattgac |
4397363 |
T |
|
| Q |
315 |
gttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaattcatccac |
414 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
4397362 |
gttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatttatatat--ttttccttttgaatttatctctggtttactaattcatccac |
4397265 |
T |
|
| Q |
415 |
ctgttagcctataatttcgacggactgatttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
514 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4397264 |
ctgttagcctataatttcgacaggttgatttaatgcagtaaaag--ttggctttttgatctttcacgaattaaaaatgtcattgctagcatgaagatttt |
4397167 |
T |
|
| Q |
515 |
gagagtttgggatttagtatttggcgaattt-acgagctctgaagttcgacaagaggcagagccataagaagtttggttgaagccaaacagttgctgtcg |
613 |
Q |
| |
|
| |||||||||||||||||||||| ||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4397166 |
gggagtttgggatttagtatttggagaagttcaagagctctgaagttcgacaagaggcagagcagaaagaagtttggttgaagccaaacagttgctgtcg |
4397067 |
T |
|
| Q |
614 |
aagggaaagaatttgataaaaggtaataaaagaaaacacaacagcacaagagtgcttatacaactattaataacctaatctaacttataaataactagag |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4397066 |
aagggaaagaatttgataaaaggtaataaaagaaaacacaacagcacaagagtgcttatacaactattaataacctaatctaacttataaataactagag |
4396967 |
T |
|
| Q |
714 |
ctatcaaatttgccccggactcggtatgtctcgtaacttataaaatatttattttcatatgacatgaacgatttaaaagtcgttgtttatacacaaacaa |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4396966 |
ctatcaaatttgccccggactcggtatgtctcgtaacttataaaatatttattttcatatgacatgaacgatttaaaagtcgttgtttatacacaaacaa |
4396867 |
T |
|
| Q |
814 |
taagtgagttatctctgnnnnnnnnngttcaaacaccgtcattatgcacatataaacttttaaata------------atatgtatgtatggttgtatat |
901 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4396866 |
taagtgagttatctctggttttttttgttcaaacaccgtcattatgcacatataaacttttaaataatatgtatgtatatatgtatgtatggttgtatat |
4396767 |
T |
|
| Q |
902 |
gtttatcactttaagtattttaattgttttctctagtagttgaagctcacacatttaaatttggaaaagtggtttgt-cggagttcgaa |
989 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||| ||| ||||||||||| |
|
|
| T |
4396766 |
gtttatcactttaagtattttaattgttttctctagtaggtgaagctcacgcatttaaatatggagaagtggagtgtccggagttcgaa |
4396678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 131 - 337
Target Start/End: Complemental strand, 4459095 - 4458890
Alignment:
| Q |
131 |
ttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcg |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||||| ||| |||||||||| || |||||||||||| |
|
|
| T |
4459095 |
ttctttggtgttgatttgtagaggtgtggtggttggcattggcatcatgggtaaccttgtgttgatgcttt-ttgttatttaggaacttgttgtatttct |
4458997 |
T |
|
| Q |
231 |
ttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagattgacgttttattaataaaat |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4458996 |
ttgttgcttttagaagtttacgactacaacaatattgtttttttgcattagctcaattcaataacgtcttatatttggattgacgttttattaataaaat |
4458897 |
T |
|
| Q |
331 |
ttgttgt |
337 |
Q |
| |
|
||||||| |
|
|
| T |
4458896 |
ttgttgt |
4458890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 4458831 - 4458775
Alignment:
| Q |
349 |
gttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaatt |
407 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4458831 |
gttgaatttcattatttatatat--ttttccttttgaatttatgtctggtttactaatt |
4458775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 4499043 - 4499097
Alignment:
| Q |
35 |
gtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactg |
89 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4499043 |
gtaaccttgtatctttgcagaaactttgcatttctaactgcttatcattaaactg |
4499097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 36498317 - 36498386
Alignment:
| Q |
444 |
ttaatgcagtcaaagagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagattt |
513 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
36498317 |
ttaatgcagtcaatgagttgaccttttgttctttcaagaattaaaaatatcatttctagcatgaagattt |
36498386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 333
Target Start/End: Complemental strand, 1026276 - 1026100
Alignment:
| Q |
157 |
tggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcgttgttgcttttagaagtttactgcta |
256 |
Q |
| |
|
||||||| || |||||||||||| || ||||||| ||| |||| |||||||||| | | ||||||| |||| |||||||||| | ||||||||||| |
|
|
| T |
1026276 |
tggtggtggatattggcatcatgagttgccttgtgttggagtttt-ttgttatttaggtgcttgttgtgtttctttgttgctttcgggtgtttactgcta |
1026178 |
T |
|
| Q |
257 |
caacaata-ttgttttcttgcattagcccaattcaataacgtcttatattcagattgacgttttattaataaaatttg |
333 |
Q |
| |
|
| || || ||||| | ||| ||| |||||||| |||| ||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
1026177 |
tagcagtacttgttcttttgtattggcccaatttgataatgtcttatattcggattgttgcattattaataaaatttg |
1026100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 416 - 513
Target Start/End: Original strand, 33378967 - 33379066
Alignment:
| Q |
416 |
tgttagcctataatttcgacggactgatttaatgcagtcaa--agagttggttttttgatctttcacgaattaaaaatgtcattgctagcatgaagattt |
513 |
Q |
| |
|
||||||||| |||||||||| || | ||||||||||||| ||||||| ||||||| ||||||| |||||||| ||| || ||||||||||||||| |
|
|
| T |
33378967 |
tgttagcctgtaatttcgacatgctcaattaatgcagtcaatgagagttgattttttgttctttcaagaattaaagatgatgtttctagcatgaagattt |
33379066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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