View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6828_low_10 (Length: 283)
Name: NF6828_low_10
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 22043740 - 22043471
Alignment:
| Q |
1 |
ttatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcagattcaaccaagactaccattatcatctgttaacaaaagga |
100 |
Q |
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| T |
22043740 |
ttatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcaaattcaaccaagactaccattatcctctgttaacaaaagga |
22043641 |
T |
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| Q |
101 |
tggaacaaaataaaattgcattatcaattttctgataatgttgatattgtcttatcttactatggaagtaannnnnnngcagttaaatctttcaatactc |
200 |
Q |
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| T |
22043640 |
tggaacaaaataaaattgcattatcaatttcctgataatgttgatgttgtcttatcttactatggaagtagtttttttgcacttaaatctttcaatactc |
22043541 |
T |
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| Q |
201 |
taaactccacatcacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaatttactttga |
270 |
Q |
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| T |
22043540 |
taaactccacatcacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaatttcctttga |
22043471 |
T |
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